David-Peede / BIOL1435
Resources for Brown University's BIOL 1435 course.
☆20Updated 4 months ago
Related projects: ⓘ
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆40Updated last week
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆45Updated 7 months ago
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- starfish: a modular toolkit for giant mobile element annotation☆26Updated last month
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- Interim data for the Darwin Tree of Life Project☆32Updated 4 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆52Updated last week
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- A massively parallel tool for model selection and tree inference on thousands of genes☆41Updated 6 months ago
- Synteny Imager☆60Updated 3 weeks ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- BEAV: Bacterial Element Annotation reVamped☆55Updated 2 weeks ago
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆19Updated last month
- Tutorial about R package PopGenome☆39Updated 5 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆43Updated 2 months ago
- IS mapping software☆50Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆43Updated 8 months ago
- Quantifying Introgression via Branch Lengths☆49Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆47Updated last week
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- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆54Updated 11 months ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆37Updated 3 years ago
- HyPhy standalone analyses☆37Updated 3 months ago
- A set of functions to visualise genotypes based on a VCF☆83Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆50Updated 3 weeks ago
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- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆10Updated 11 months ago