pcingola / BigDataScriptLinks
BigDataScript: Scirpting language for big data
☆92Updated 4 years ago
Alternatives and similar repositories for BigDataScript
Users that are interested in BigDataScript are comparing it to the libraries listed below
Sorting:
- Deprecated☆100Updated 6 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- workflow and resource management system for bioinformatics data analysis☆69Updated 5 years ago
- GenomicsDB☆110Updated 2 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆295Updated last month
- Mulled - Automatized Containerized Software Repository☆66Updated last year
- Bpipe - a tool for running and managing bioinformatics pipelines☆239Updated 2 weeks ago
- Quality control methods for human genomic variants.☆62Updated 3 years ago
- Benchmarking toolkit for variant calling☆48Updated 5 years ago
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆67Updated 5 years ago
- A scalable genome browser. Apache 2 licensed.☆126Updated 2 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Updated 4 years ago
- CloudBioLinux: configure virtual (or real) machines with tools for biological analyses☆257Updated last year
- Streaming fragment assignment and quantification for high-throughput sequencing.☆37Updated 5 years ago
- New url: https://github.com/biointec/halvade☆19Updated 8 years ago
- Isaac Genome Alignment Software☆36Updated 10 years ago
- Python graph database framework for bioinformatics☆94Updated 3 years ago
- Fast and memory-efficient sequencing error corrector☆93Updated last year
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆40Updated 8 months ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆76Updated 8 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 6 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 9 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆72Updated 2 years ago
- NGS Language Bindings☆119Updated last year
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆85Updated 7 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆25Updated 9 years ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Updated 9 years ago