Alternatives and similar repositories for BigDataScript:

Users that are interested in BigDataScript are comparing it to the libraries listed below

• MG-RAST / AWE
  workflow and resource management system for bioinformatics data analysis
  ☆69Updated 4 years ago
• common-workflow-library / legacy
  Deprecated
  ☆100Updated 5 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 5 years ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• dnanexus-archive / samtools
  ☆30Updated 8 years ago
• sequencing / isaac_aligner
  Isaac Genome Alignment Software
  ☆37Updated 9 years ago
• PriceLab / snapr
  SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis
  ☆25Updated 9 years ago
• HadoopGenomics / Hadoop-BAM
  Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
  ☆70Updated 2 years ago
• vgteam / xg-old
  succinct labeled graphs with collections and paths
  ☆15Updated 6 years ago
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 4 years ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 8 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆47Updated 4 years ago
• PMBio / limix-backup
  ☆45Updated 8 years ago
• bcbio / bcbio-nextgen-vm
  Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
  ☆65Updated 4 years ago
• brentp / irelate
  Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
  ☆47Updated 4 years ago
• BenLangmead / crossbow
  Variant calling from sequence reads using cloud computing
  ☆39Updated 11 years ago
• ENCODE-DCC / snovault
  The SnoVault general purpose hybrid object-relational database
  ☆16Updated 10 months ago
• verilylifesciences / variant-qc
  Quality control methods for human genomic variants.
  ☆62Updated 2 years ago
• opencb / hpg-bigdata
  This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
  ☆17Updated 6 years ago
• cjlee112 / pygr
  Python graph database framework for bioinformatics
  ☆93Updated 3 years ago
• ddcap / halvade
  New url: https://github.com/biointec/halvade
  ☆19Updated 7 years ago
• dnanexus / dx-toolkit
  DNAnexus platform client libraries
  ☆91Updated this week
• HAShihab / fathmm-MKL
  Predict the functional consequences of both coding and non-coding single nucleotide variants (SNVs)
  ☆19Updated 3 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated last year
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• shenwei356 / gtaxon
  gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…
  ☆15Updated 8 years ago
• CGATOxford / cgat
  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
  ☆124Updated 6 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 6 years ago