DIYtranscriptomics / DIYtranscriptomics.github.io

Related projects: ⓘ

• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• friedue / Notes
  Personal notes about work- and coding-related topics
  ☆19Updated last year
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆33Updated 6 months ago
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆61Updated 4 months ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆98Updated last month
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆33Updated last week
• PierreBSC / Viral-Track
  ☆55Updated 4 years ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆35Updated 6 years ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆60Updated 6 months ago
• broadinstitute / 2020_scWorkshop
  Code and data repository for the 2020 physalia course on single cell RNA sequencing.
  ☆55Updated 4 years ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆72Updated last year
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆76Updated 3 weeks ago
• MangiolaLaboratory / sccomp
  Testing differences in cell type proportions from single-cell data.
  ☆90Updated last week
• rpolicastro / scProportionTest
  ☆56Updated last year
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆28Updated 5 years ago
• BaderLab / Cytoscape_workflows
  collection of notebooks with different cytoscape workflows
  ☆47Updated last year
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆51Updated last year
• hbctraining / Accessing_public_genomic_data
  Tutorials on accessing public reference and genomic data
  ☆29Updated 2 years ago
• WCSCourses / SingleCell_23
  Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells
  ☆16Updated last month
• hbctraining / DGE_workshop_salmon
  ☆67Updated 2 years ago
• hbctraining / main
  ☆51Updated last week
• tavareshugo / tutorial_DESeq2_contrasts
  ☆54Updated 4 months ago
• elimereu / matchSCore2
  ☆53Updated 3 years ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆29Updated 4 months ago
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆49Updated 2 years ago
• broadinstitute / 2019_scWorkshop
  Repo for Physalia course Analysis of Single Cell RNA-Seq data
  ☆31Updated 4 years ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆86Updated last year
• wjawaid / enrichR
  An R interface to enrichR
  ☆76Updated 5 months ago
• Novartis / easyTrackHubs
  This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…
  ☆27Updated 4 months ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆53Updated last week