PDBeurope / arpeggioLinks
Calculation of interatomic interactions in molecular structures
☆96Updated 9 months ago
Alternatives and similar repositories for arpeggio
Users that are interested in arpeggio are comparing it to the libraries listed below
Sorting:
- ☆68Updated 11 months ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆25Updated this week
- ☆66Updated last week
- A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…☆57Updated 3 months ago
- Trusted force field files for gromacs☆52Updated 7 months ago
- Modeling with limited data☆58Updated 7 months ago
- Calculation of interatomic interactions in molecular structures☆74Updated 3 years ago
- Simple protein-ligand complex simulation with OpenMM☆85Updated last year
- A python toolkit for analysing membrane protein-lipid interactions.☆63Updated 2 years ago
- Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina☆48Updated last week
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆82Updated 2 months ago
- A python module to plot secondary structure schemes☆25Updated last year
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆48Updated 2 weeks ago
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆34Updated last year
- The public versio☆58Updated last year
- Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes☆135Updated last week
- Fully automated high-throughput MD pipeline☆61Updated last week
- An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculatio…☆112Updated 7 months ago
- ☆91Updated 4 months ago
- A simple Python library to generate model peptides☆85Updated 4 years ago
- rDock is a fast and versatile Open Source docking program that can be used to dock small molecules against proteins and nucleic acids. It…☆56Updated 4 months ago
- FreeSASA Python Module☆54Updated last year
- Automated Adaptive Absolute alchemical Free Energy calculator☆97Updated 3 weeks ago
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆59Updated this week
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆70Updated 5 months ago
- Analysis of non-covalent interactions in MD trajectories☆58Updated 5 months ago
- Ligand-Protein Interaction Mapping☆55Updated last month
- Open-source tool to generate 3D-ready small molecules for virtual screening☆54Updated 3 weeks ago
- Best practice document for alchemical free energy calculations going to livecoms journal☆74Updated 2 weeks ago
- Molecular Dynamics on Google Compute Engine, Colab, AWS (Amazon Web Services) and other Cloud Computing services☆17Updated 6 months ago