Alternatives and similar repositories for ComputAge:

Users that are interested in ComputAge are comparing it to the libraries listed below

• ComputationalAgingLab / Methylotl
  ☆10Updated 11 months ago
• serjisa / transcriptomics.msu
  Materials for Transcripromics Data Analysis course at Moscow State University
  ☆65Updated last year
• saezlab / decoupler-py
  Python package to perform enrichment analysis from omics data.
  ☆192Updated last week
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆118Updated 2 years ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆151Updated 8 months ago
• Python-BI-2023 / course_materials
  This is repo for the materials of the BI2023 python course
  ☆20Updated 11 months ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆184Updated 2 months ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆144Updated 4 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆99Updated 8 months ago
• ComputationalAgingLab / computational_aging_course
  Free online course on computational biology of aging driven by Jupyter book and supported by Skoltech.
  ☆16Updated last year
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆154Updated 2 years ago
• snap-stanford / SATURN
  ☆121Updated 9 months ago
• AIRI-Institute / GENA_LM
  GENA-LM is a transformer masked language model trained on human DNA sequence.
  ☆191Updated this week
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆69Updated this week
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆143Updated this week
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆58Updated this week
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆67Updated this week
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆80Updated 2 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆120Updated 2 months ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆159Updated last year
• genialis / RNAnorm
  Normalization of RNA-seq gene expression
  ☆85Updated 2 months ago
• scverse / muon
  muon is a multimodal omics Python framework
  ☆231Updated 2 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆56Updated 3 weeks ago
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆256Updated last week
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆35Updated 6 months ago
• jmschrei / tangermeme
  Biological sequence analysis for the modern age.
  ☆217Updated last month
• scverse / pertpy
  Perturbation Analysis in the scverse ecosystem.
  ☆170Updated this week
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆99Updated last week
• icbi-lab / infercnvpy
  Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
  ☆151Updated last week
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆346Updated 3 months ago