CogStack / CogStack-Pipeline
Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning
☆41Updated last year
Related projects ⓘ
Alternatives and complementary repositories for CogStack-Pipeline
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆72Updated last week
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated last year
- MedXN is a medication normalization system built upon Apache UIMA framework.☆22Updated 9 months ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆59Updated 2 years ago
- A near real-time named-entity recognizer☆59Updated 5 months ago
- Classes for ClinicalTrials.gov related projects☆48Updated 5 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated 10 months ago
- ☆12Updated 4 years ago
- Bio-YODIE is GATE's biomedical named entity linking pipeline.☆17Updated 5 years ago
- A simple REST-server around ctakes clinical pipeline.☆30Updated 7 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆64Updated this week
- Public release of the DeepPhe analytic software☆30Updated last year
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆36Updated 4 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Updated last year
- Building data processing pipelines for documents processing with NLP using Apache NiFi and related services☆38Updated last week
- A Serverless Text Annotation Tool for Corpus Development☆54Updated last month
- An information extraction system for free-text eligibility criteria☆36Updated 5 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆84Updated 2 months ago
- ☆23Updated 5 years ago
- ☆51Updated 4 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.☆51Updated last month
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆29Updated 6 months ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆59Updated last month
- A generator of synthetic psychiatric notes.☆16Updated 4 years ago
- The Snorocket Description Logic classifier for EL++ with concrete domains support☆22Updated 3 years ago
- clinical free text de-identification software☆41Updated 6 years ago
- An Interactive Tool for Natural Language Processing on Clinical Text☆22Updated 3 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆10Updated 3 years ago
- Flexible and powerful platform for biomedical information extraction from text☆39Updated 7 years ago