Alternatives and similar repositories for CogStack-Pipeline:

Users that are interested in CogStack-Pipeline are comparing it to the libraries listed below

• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆79Updated last week
• CogStack / CogStack-NiFi
  Building data processing pipelines for documents processing with NLP using Apache NiFi and related services
  ☆47Updated last week
• BD2KOnFHIR / NLP2FHIR
  NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications
  ☆60Updated 2 years ago
• OHNLP / awesome-clinical-nlp
  ☆14Updated 4 years ago
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆59Updated 10 months ago
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated 2 years ago
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 4 years ago
• nlpie / biomedicus2
  Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.
  ☆44Updated 2 years ago
• tmills / ctakes-docker
  ☆23Updated 5 years ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆65Updated 4 months ago
• p2 / ClinicalTrialsNLP
  Classes for ClinicalTrials.gov related projects
  ☆47Updated 5 years ago
• OHNLP / MedXN
  MedXN is a medication normalization system built upon Apache UIMA framework.
  ☆23Updated last year
• beamandrew / cui2vec
  ☆53Updated 4 years ago
• beaunorgeot / philter_ucsf
  clinical free text de-identification software
  ☆41Updated 6 years ago
• NUSCRIPT / OMOP_to_Graph
  Transform the OMOP model to graph model
  ☆22Updated 3 months ago
• Tian312 / EliIE
  An information extraction system for free-text eligibility criteria
  ☆37Updated 6 years ago
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆42Updated last year
• abchapman93 / VA_COVID-19_NLP_BSV
  An NLP pipeline for COVID-19 surveillance used in the Department of Veterans Affairs Biosurveillance.
  ☆15Updated 2 years ago
• ncbi-nlp / DeepRel
  A convolutional neural network model for relation extraction.
  ☆13Updated 2 years ago
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆55Updated last month
• OHDSI / Athena
  Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
  ☆60Updated 2 weeks ago
• CogStack / MedCATservice
  Running MedCAT as a RESTful web service
  ☆20Updated last month
• ebegoli / SynthNotes
  A generator of synthetic psychiatric notes.
  ☆16Updated 4 years ago
• aehrc / snorocket
  The Snorocket Description Logic classifier for EL++ with concrete domains support
  ☆23Updated 3 years ago
• ncbi-nlp / ezTag
  Web interface that allows users to perform computer-assisted text annotation
  ☆16Updated 2 years ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆30Updated 10 months ago
• dirkweissenborn / ctakes-server
  A simple REST-server around ctakes clinical pipeline.
  ☆30Updated 8 years ago
• GateNLP / Bio-YODIE
  Bio-YODIE is GATE's biomedical named entity linking pipeline.
  ☆17Updated 5 years ago