CogStack / CogStack-PipelineLinks
Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning
☆43Updated 2 years ago
Alternatives and similar repositories for CogStack-Pipeline
Users that are interested in CogStack-Pipeline are comparing it to the libraries listed below
Sorting:
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆81Updated last week
- Building data processing pipelines for documents processing with NLP using Apache NiFi and related services☆52Updated this week
- ☆16Updated 4 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Updated 2 years ago
- ☆23Updated 5 years ago
- A JSON-based rest service to process unstructured clinical text through a smart natural language processing system.☆51Updated 2 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 2 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆24Updated last year
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- A simple REST-server around ctakes clinical pipeline.☆30Updated 8 years ago
- A near real-time named-entity recognizer☆61Updated this week
- clinical free text de-identification software☆41Updated 6 years ago
- Common clinical models in the forms of openEHR archetypes and GDL guidelines☆37Updated 7 months ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- Health NLP Examples☆89Updated 6 years ago
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- A Python library to de-identify medical records with state-of-the-art NLP methods.☆139Updated last year
- Load all concepts and relationships from UMLS into a Neo4j database☆11Updated 4 years ago
- ☆55Updated 5 years ago
- An Interactive Tool for Natural Language Processing on Clinical Text☆22Updated 3 years ago
- Bio-YODIE is GATE's biomedical named entity linking pipeline.☆17Updated 5 years ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆63Updated 4 months ago
- Web interface that allows users to perform computer-assisted text annotation☆16Updated 2 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- A Serverless Text Annotation Tool for Corpus Development☆56Updated 4 months ago
- ☆98Updated 2 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆107Updated last year