CogStack / working_with_cogstackLinks
Basic setup and easy to follow templates to interact and search CogStack for data analysts
☆12Updated 3 weeks ago
Alternatives and similar repositories for working_with_cogstack
Users that are interested in working_with_cogstack are comparing it to the libraries listed below
Sorting:
- General tutorials for the setup and use of MedCAT.☆38Updated last month
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated 3 weeks ago
- Winners of the SNOMED CT Entity Linking Challenge☆37Updated last year
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆81Updated this week
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- all scripts used in gatortron project☆120Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆95Updated last week
- ☆18Updated last year
- Med-BERT, contextualized embedding model for structured EHR data☆288Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- UCSF Philter for UC☆13Updated last year
- Medical Concept Annotation Tool☆500Updated last week
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆68Updated last week
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆176Updated last month
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆80Updated last week
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- source codes based on PyTorch to analyze EHR☆142Updated last year
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆68Updated last year
- Mapping the MIMIC-III database to the OMOP schema☆137Updated last year
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆64Updated last month
- PMC-Patients☆98Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 2 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- Open source clinical text de-identification☆131Updated 10 months ago
- Python Radiology Text Analysis System☆14Updated last year
- ☆18Updated last year
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆106Updated 10 months ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆71Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆111Updated 2 years ago