CogStack / working_with_cogstackLinks
Basic setup and easy to follow templates to interact and search CogStack for data analysts
☆12Updated 3 months ago
Alternatives and similar repositories for working_with_cogstack
Users that are interested in working_with_cogstack are comparing it to the libraries listed below
Sorting:
- Med-BERT, contextualized embedding model for structured EHR data☆311Updated last year
- Medical Concept Annotation Tool☆519Updated 5 months ago
- General tutorials for the setup and use of MedCAT.☆41Updated 7 months ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆434Updated 3 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆98Updated 6 months ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆208Updated 7 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆89Updated last month
- all scripts used in gatortron project☆130Updated 2 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆48Updated 2 years ago
- PMC-Patients☆102Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆119Updated 2 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆70Updated 6 months ago
- A python package for removing duplicate text in clinical notes or other documents☆39Updated 5 years ago
- Clinical text summarization by adapting large language models☆155Updated last year
- A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks☆165Updated 11 months ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆74Updated 2 years ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆76Updated 2 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆30Updated last year
- Open source clinical text de-identification☆146Updated last year
- source codes based on PyTorch to analyze EHR☆148Updated last year
- A collection of papers on automated medical coding from free-texts☆150Updated last year
- System for Medical Concept Extraction and Linking☆429Updated last year
- repository for Publicly Available Clinical BERT Embeddings☆747Updated 5 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆192Updated this week
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆161Updated 3 weeks ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆94Updated 2 months ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆121Updated 2 years ago
- ☆19Updated 6 months ago
- ☆92Updated last year
- Winners of the SNOMED CT Entity Linking Challenge☆43Updated last year