GateNLP / Bio-YODIE
Bio-YODIE is GATE's biomedical named entity linking pipeline.
☆17Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for Bio-YODIE
- Public release of the DeepPhe analytic software☆30Updated last year
- Flexible and powerful platform for biomedical information extraction from text☆39Updated 7 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆19Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- A near real-time named-entity recognizer☆59Updated 5 months ago
- ☆16Updated 6 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Updated last year
- Medical Relations and Entities Extraction☆35Updated 2 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆84Updated 2 months ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆72Updated last week
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated last year
- Retrieve and process PubTator annotations☆43Updated last year
- Crowdsourced ground truth for medical relation extraction.☆69Updated 5 years ago
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆41Updated last year
- Bidirectional Recurrent Neural Network based sequence labeling for Medical Text.☆26Updated 8 years ago
- Tools for working with the S800 corpus☆11Updated 4 years ago
- An information extraction system for free-text eligibility criteria☆36Updated 5 years ago
- A convolutional neural network model for relation extraction.☆12Updated last year
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- ☆70Updated 11 months ago
- A Serverless Text Annotation Tool for Corpus Development☆54Updated last month
- Predicting adverse drug reactions from a knowledge graph☆27Updated 3 years ago
- Named Entity Recognition for biomedical entities☆47Updated last year
- SNP Extraction Tool for Human Variations☆27Updated 9 months ago
- Reach Biomedical Information Extraction☆97Updated 2 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆36Updated 4 years ago