GateNLP / Bio-YODIELinks
Bio-YODIE is GATE's biomedical named entity linking pipeline.
☆17Updated 6 years ago
Alternatives and similar repositories for Bio-YODIE
Users that are interested in Bio-YODIE are comparing it to the libraries listed below
Sorting:
- Flexible and powerful platform for biomedical information extraction from text☆39Updated 8 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- Machine reading comprehension on clinical case reports☆150Updated 3 months ago
- An ontology matcher for matching entities between knowledgebases☆71Updated 3 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- ☆76Updated last year
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- Predicting adverse drug reactions from a knowledge graph☆28Updated 4 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Updated 2 years ago
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆131Updated 2 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆90Updated 2 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Updated 7 years ago
- UMLS in Python with MongoDB.☆18Updated 7 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆50Updated 5 years ago
- ☆101Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 3 months ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- Public release of the DeepPhe analytic software☆30Updated last week
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆66Updated 4 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 6 months ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 6 years ago
- ☆15Updated 5 years ago
- A near real-time named-entity recognizer☆62Updated 4 months ago
- Reach Biomedical Information Extraction☆98Updated last year
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 5 years ago
- OAQA Biomedical Question Answering (BioASQ) System☆37Updated 8 years ago
- Basic Python 3 tools to interact with UMLS lexica☆124Updated 6 years ago
- Utility for cui2vec in Go☆13Updated 2 years ago