GateNLP / Bio-YODIE
Bio-YODIE is GATE's biomedical named entity linking pipeline.
☆17Updated 5 years ago
Alternatives and similar repositories for Bio-YODIE:
Users that are interested in Bio-YODIE are comparing it to the libraries listed below
- Flexible and powerful platform for biomedical information extraction from text☆39Updated 7 years ago
- A convolutional neural network model for relation extraction.☆13Updated last year
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- A near real-time named-entity recognizer☆59Updated 7 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆40Updated 4 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆84Updated 4 months ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 5 years ago
- Medical Relations and Entities Extraction☆35Updated 2 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Updated last year
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 4 years ago
- Predicting adverse drug reactions from a knowledge graph☆28Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆76Updated this week
- Tools for working with the S800 corpus☆11Updated 4 years ago
- Python library for work with BioCreative files☆13Updated 6 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆56Updated 6 years ago
- Retrieve and process PubTator annotations☆43Updated last year
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 8 years ago
- Reach Biomedical Information Extraction☆97Updated last month
- Classes for ClinicalTrials.gov related projects☆48Updated 5 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆61Updated 3 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- ☆16Updated 6 years ago
- Web interface that allows users to perform computer-assisted text annotation☆16Updated 2 years ago
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆41Updated 2 years ago
- Repository for managing python tools that model standoff annotations for i2b2 2014 challenge☆14Updated 9 years ago
- An ontology matcher for matching entities between knowledgebases☆66Updated 2 years ago