ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data
☆15Jan 22, 2026Updated 9 months ago
Alternatives and similar repositories for ChimPipe
Users that are interested in ChimPipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆17Sep 16, 2026Updated last month
- Standalone tool and library allowing to work with barcoded linked-reads☆12Dec 7, 2024Updated last year
- A software to detect virome-wide integrations☆13Jan 27, 2021Updated 5 years ago
- ☆12May 6, 2021Updated 5 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 8 years ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Dec 14, 2022Updated 3 years ago
- ☆14Sep 26, 2019Updated 7 years ago
- Stuff for the hackrf one and portapack☆11May 26, 2022Updated 4 years ago
- A fast and memory-efficient method for haplotype assembly from long gapless reads.☆10Jun 11, 2018Updated 8 years ago
- See the main fork of this repository here >>>☆39Sep 18, 2026Updated last month
- A python package for showing JBrowse views☆27Jul 22, 2026Updated 3 months ago
- SV genotyper for long reads with a variation graph☆17Sep 28, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆11Dec 13, 2022Updated 3 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 9 years ago
- STAR-Fusion codebase☆255Oct 14, 2026Updated 2 weeks ago
- LLM based autonomous agent that does online comprehensive research on any given topic☆14Sep 27, 2024Updated 2 years ago
- List of sensitive fields that should be masked, obfuscated, or purged for security purposes☆24Sep 11, 2023Updated 3 years ago
- ☆11Aug 16, 2019Updated 7 years ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 9 months ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- GEMTools main repository☆17Jun 21, 2022Updated 4 years ago
- Collects all Discord server member data and exports to an Excel spreadsheet and also to an HTML file with avatars displayed☆13Jul 8, 2023Updated 3 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- ☆11Sep 8, 2026Updated last month
- RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection☆29Oct 1, 2020Updated 6 years ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 4 years ago
- ☆22Apr 6, 2018Updated 8 years ago
- RNA Fusion Detection and Quantification☆18Oct 31, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- A WIFI Pentesting Tool ( WIFI Hacking ) with Powerfull tools.☆14Aug 17, 2024Updated 2 years ago
- Alternative Splicing ToolKit☆10Oct 29, 2025Updated last year
- A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of h…☆25Oct 21, 2021Updated 5 years ago
- Some power wifi/dev stuff for Flipper Zero by B4☆15Oct 19, 2022Updated 4 years ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆12Sep 26, 2024Updated 2 years ago
- Exposing public genomics data via computable and searchable metadata☆13Jul 9, 2024Updated 2 years ago