Provide RNA and DNA Foundation Model Benchmarks and Applications
☆26Nov 26, 2025Updated 3 months ago
Alternatives and similar repositories for OmniGenBench
Users that are interested in OmniGenBench are comparing it to the libraries listed below
Sorting:
- RiboNN: predicting translation efficiencies from mRNA sequences☆53Jan 12, 2026Updated last month
- A multimodal model bridging vision and genomics for biodiversity monitoring at scale.☆16Sep 18, 2025Updated 5 months ago
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Sep 22, 2024Updated last year
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated 8 months ago
- RNA Multiple Sequence Alignment☆49Jul 20, 2023Updated 2 years ago
- A container for the forna visualization software.☆21May 30, 2024Updated last year
- A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.☆30Jan 16, 2025Updated last year
- Collection of mRNA benchmarks☆46Feb 15, 2026Updated 3 weeks ago
- Learning and Aligning Large Protein Families with support of protein language models.☆30Updated this week
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 10 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆10Sep 30, 2021Updated 4 years ago
- ArXiv 每日论文推送助手 自动抓取 ArXiv 最新 AI 论文,使用 DeepSeek 进行深度分析,并推送到飞书。☆30Feb 5, 2026Updated last month
- ☆11Oct 6, 2025Updated 5 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆38Sep 14, 2025Updated 5 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago
- ☆11Jun 13, 2024Updated last year
- ☆14Dec 18, 2024Updated last year
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- Benchmarks for classification of genomic sequences☆172Aug 14, 2025Updated 6 months ago
- Primary RNA sequence model☆42May 20, 2024Updated last year
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- ☆17Dec 15, 2025Updated 2 months ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Apr 13, 2024Updated last year
- Effective Attention Sheds Light On Interpretability - Findings of ACL2021☆11May 16, 2021Updated 4 years ago
- ☆13Apr 23, 2025Updated 10 months ago
- ☆12Oct 31, 2020Updated 5 years ago
- AngularJS filters wrapping the 'humanize' library☆10Jul 30, 2015Updated 10 years ago
- Semiautomated layout of RNA tertiary structure diagrams☆14Feb 26, 2025Updated last year
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- ☆13Apr 18, 2022Updated 3 years ago
- ☆10Apr 8, 2018Updated 7 years ago
- ☆16Jun 9, 2025Updated 9 months ago
- This repo contains industry use cases and application code for GenAI☆14Oct 25, 2024Updated last year
- ☆15Jan 27, 2025Updated last year
- A tool for visualising kmers in 2D space.☆12Feb 23, 2025Updated last year
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- various sources and scripts for genomic research software☆10May 11, 2015Updated 10 years ago