BoevaLab / CanSig
Discovering de novo shared transcriptional programs in single cancer cells
☆12Updated last year
Related projects: ⓘ
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 8 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆30Updated 6 months ago
- ☆31Updated 2 weeks ago
- ☆34Updated 4 months ago
- Using BCR and expression for sequence embedding☆18Updated 3 weeks ago
- ☆37Updated 3 weeks ago
- ☆25Updated 3 weeks ago
- ☆37Updated this week
- Information-based dimensionality reduction☆29Updated 3 weeks ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last year
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆24Updated 5 months ago
- Molecular interactions inference from single-cell multi-omics data☆17Updated last month
- Gene Set + S2G strategy annotations analyzed for disease architecture☆46Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 11 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆21Updated 2 years ago
- Functional Inference of Gene Regulation☆33Updated 2 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 3 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆19Updated 3 years ago
- ☆10Updated 2 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 4 months ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆24Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆39Updated 2 years ago
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆11Updated 3 weeks ago
- ☆16Updated 2 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆26Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆56Updated 4 months ago
- ☆35Updated last week
- ☆19Updated 2 years ago
- RNA velocity validation☆23Updated 2 years ago