macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames
☆10Jul 20, 2026Updated 2 months ago
Alternatives and similar repositories for mmdf
Users that are interested in mmdf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- modular Python packages for cryo-EM and cryo-ET☆22Updated this week
- ☆19Jan 23, 2026Updated 8 months ago
- Two-Dimensional Template Matching implemented in Python☆16Sep 24, 2026Updated 2 weeks ago
- Scripts and Tools for Electron Microscopy Image Analysis.☆11Jul 27, 2026Updated 2 months ago
- IMOD model files as pandas dataframes in Python☆13Jun 26, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Manipulate and mine Relion .star files☆23Nov 25, 2024Updated last year
- ☆20Dec 22, 2025Updated 9 months ago
- SIMPLE 4.0: Computational Environment for Electron Microscopy Methods Development☆28Updated this week
- Phantom generator☆28Aug 8, 2025Updated last year
- learns to improve tilt-series alignment by making it worse☆37Updated this week
- Python program for automated electron diffraction data collection☆62Sep 12, 2026Updated 3 weeks ago
- Conventions for 3DEM software packages☆19Feb 22, 2022Updated 4 years ago
- CIF (Crystallographic Information File) support for Visual Studio Code.☆13Nov 16, 2025Updated 10 months ago
- Half-synthetic cryoEM micrograph generator that projects pdbs>mrcs onto existing buffer cryoEM micrographs☆19Oct 25, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- spatialstats is collection of statistical tools and utility routines used to analyze the multi-scale structure of 2D and 3D spatial field…☆12Aug 2, 2022Updated 4 years ago
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated last year
- BoxNet implemented in TensorFlow and all current training data☆33Apr 25, 2019Updated 7 years ago
- ☆45Updated this week
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆40Jun 5, 2026Updated 4 months ago
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Oct 1, 2026Updated last week
- Self-supervised learning for isotropic cryoET reconstruction☆92Dec 29, 2024Updated last year
- Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data☆16Sep 27, 2026Updated last week
- ManifoldEM Python suite☆17Nov 22, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Benchmark and reference set for conformational energies in peptides☆12Oct 10, 2018Updated 7 years ago
- SerialEM, Python, and Unity Simulations for Cryo-Electron Tomography and Montage Tomography.☆17Oct 25, 2024Updated last year
- A PyTorch only Library for Electron Backscatter Diffraction (EBSD)☆18Feb 17, 2025Updated last year
- 🍦Icecream: a self-supervised framework for cryo-ET reconstruction☆36Sep 15, 2026Updated 3 weeks ago
- Speed up coding/extending image analysis in Python.☆37Sep 3, 2026Updated last month
- RECOVAR is a software for reconstructing and analyzing conformations from cryo-EM and cryo-ET datasets☆39Updated this week
- autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.☆19Jul 24, 2025Updated last year
- DataViz protocols book for wet lab scientists☆17May 26, 2026Updated 4 months ago
- Python module to read/write SerialEM navigator files.☆13Jan 17, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Romanian grammar lessons for Duolingo☆18Apr 9, 2022Updated 4 years ago
- Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories☆12Mar 28, 2017Updated 9 years ago
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆25Sep 30, 2026Updated last week
- Complementary tools for Relion tomo☆12Mar 9, 2024Updated 2 years ago
- Very simple script for EPU users which adds beam tilt classes to the star file☆11Nov 3, 2023Updated 2 years ago
- Web application for monitor EM results☆14Oct 1, 2026Updated last week
- Singularity image for cryo-CARE☆38Jan 7, 2022Updated 4 years ago