KosinskiLab / colabsegLinks
Jupyter-based tool for membrane segmentation manipulation
☆9Updated last year
Alternatives and similar repositories for colabseg
Users that are interested in colabseg are comparing it to the libraries listed below
Sorting:
- IMOD model files as pandas dataframes in Python☆11Updated 2 months ago
- SerialEM mdoc files as pandas dataframes☆13Updated 4 months ago
- ☆10Updated 2 weeks ago
- automated on-the-fly tilt-series alignment☆10Updated 3 years ago
- ☆17Updated 3 weeks ago
- Scripts to make cryo-electron tomography a bit easier☆13Updated last month
- a tool for using surfaces to explore volumetric data in napari☆18Updated last month
- cryolo documentation☆10Updated last year
- Miscellaneous scripts for processing cryo-ET data☆16Updated 4 months ago
- Complementary tools for Relion tomo☆10Updated last year
- A tool for conversion between subtomogram averaging softwares Dynamo and emClarity☆9Updated 5 years ago
- ☆19Updated 4 months ago
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆24Updated 3 months ago
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆27Updated 2 months ago
- cryo-EM tomogram simulator☆26Updated this week
- ☆17Updated 11 months ago
- ☆12Updated 3 months ago
- ☆12Updated 2 years ago
- segmentation of spherical vesicles in cryo-electron tomography☆10Updated 8 months ago
- Scripts and Tools for Electron Microscopy Image Analysis.☆11Updated 8 months ago
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆26Updated last month
- PIP package of cryoCARE☆34Updated last year
- ☆14Updated 4 months ago
- A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.☆15Updated 2 years ago
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆28Updated 5 months ago
- TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing☆17Updated last week
- autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.☆19Updated this week
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆35Updated 10 months ago
- Live processing and real time reconstruction of cryo☆28Updated last month
- Badly written scripts for making cryoEM easier☆13Updated 4 years ago