Jupyter-based tool for membrane segmentation manipulation
☆10Jul 9, 2025Updated last year
Alternatives and similar repositories for colabseg
Users that are interested in colabseg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IMOD model files as pandas dataframes in Python☆13Jun 26, 2025Updated last year
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Jul 1, 2026Updated 3 weeks ago
- A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.☆17Mar 4, 2023Updated 3 years ago
- a tool for using surfaces to explore volumetric data in napari☆22Jun 13, 2026Updated last month
- ☆15Jun 1, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆14Oct 17, 2025Updated 9 months ago
- cryo-EM tomogram simulator☆32Jul 10, 2026Updated last week
- ☆40Updated this week
- Self-supervised deep learning framework for CryoET analysis☆20Apr 11, 2026Updated 3 months ago
- Generates synthetic datasets for Cryo-Electron Tomography☆37Jul 14, 2026Updated last week
- ☆19Jan 23, 2026Updated 5 months ago
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆35Jul 9, 2026Updated last week
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆38Jun 5, 2026Updated last month
- SerialEM mdoc files as pandas dataframes☆14Feb 4, 2026Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆42Jan 30, 2024Updated 2 years ago
- ☆80Updated this week
- ☆27Updated this week
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆23Jan 29, 2025Updated last year
- ☆57Aug 19, 2024Updated last year
- membrane segmentation in 3D for cryo-ET☆93Updated this week
- A CTF Simulation Web App☆13May 11, 2026Updated 2 months ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated 2 years ago
- Miscellaneous scripts for processing cryo-ET data☆21Feb 25, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Image processing for cryo-electron microscopy in PyTorch☆13Apr 5, 2025Updated last year
- Template for creating a new python repository☆13Sep 28, 2025Updated 9 months ago
- Contextual Analysis Tools for cryoET and subtomogram averaging☆40Updated this week
- A collaborative knowledge sharing platform for the cryo-ET community☆19Aug 7, 2024Updated last year
- Transformer And Rapid Dimensionless Instance Segmentation☆23May 30, 2026Updated last month
- Phantom generator☆28Aug 8, 2025Updated 11 months ago
- GPU-accelerated template matching for cryo-ET☆63Updated this week
- Segment Organelles from Electron Microscopy Datasets with Segment-Anything 2☆18Jun 23, 2026Updated 3 weeks ago
- De novo analysis for cryo-electron tomography☆26Nov 8, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆40Updated this week
- macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames☆10Updated this week
- cryo-ET workflow☆10Updated this week
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆44Jun 16, 2026Updated last month
- cryolo documentation☆13Mar 5, 2026Updated 4 months ago
- Complementary tools for Relion tomo☆12Mar 9, 2024Updated 2 years ago
- 🍦Icecream: a self-supervised framework for cryo-ET reconstruction☆32Jun 23, 2026Updated 3 weeks ago