KosinskiLab / colabsegLinks
Jupyter-based tool for membrane segmentation manipulation
☆9Updated last week
Alternatives and similar repositories for colabseg
Users that are interested in colabseg are comparing it to the libraries listed below
Sorting:
- IMOD model files as pandas dataframes in Python☆11Updated 3 weeks ago
- SerialEM mdoc files as pandas dataframes☆13Updated 2 weeks ago
- ☆10Updated last week
- automated on-the-fly tilt-series alignment☆10Updated 4 years ago
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆25Updated 4 months ago
- A tool for conversion between subtomogram averaging softwares Dynamo and emClarity☆9Updated 5 years ago
- ☆20Updated last month
- a tool for using surfaces to explore volumetric data in napari☆18Updated 2 months ago
- ☆19Updated 4 months ago
- TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing☆17Updated last month
- Scripts to make cryo-electron tomography a bit easier☆13Updated this week
- Miscellaneous scripts for processing cryo-ET data☆16Updated 4 months ago
- cryo-EM tomogram simulator☆26Updated 2 weeks ago
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆35Updated 11 months ago
- ☆17Updated last year
- ☆14Updated 4 months ago
- segmentation of spherical vesicles in cryo-electron tomography☆10Updated 8 months ago
- PIP package of cryoCARE☆35Updated last year
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆25Updated 3 weeks ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆36Updated last year
- Fourier analysis and subtomogram averaging of heterogenic cylindrical structures☆13Updated this week
- Complementary tools for Relion tomo☆10Updated last year
- autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.☆19Updated 2 weeks ago
- A set of MATLAB wrapper scripts to help with pre-processing of tomography data.☆19Updated 10 months ago
- GPU-accelerated template matching for cryo-ET☆43Updated last week
- ☆12Updated 2 years ago
- Live processing and real time reconstruction of cryo☆30Updated this week
- De novo analysis for cryo-electron tomography☆22Updated 8 months ago
- cryolo documentation☆10Updated last year
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆27Updated 2 weeks ago