IMOD model files as pandas dataframes in Python
☆13Jun 26, 2025Updated last year
Alternatives and similar repositories for imodmodel
Users that are interested in imodmodel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SerialEM mdoc files as pandas dataframes☆14Feb 4, 2026Updated 4 months ago
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated 11 months ago
- ☆19Jan 23, 2026Updated 5 months ago
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30May 1, 2026Updated 2 months ago
- Complementary tools for Relion tomo☆12Mar 9, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated 2 years ago
- ☆79Updated this week
- Scripts to make cryo-electron tomography a bit easier☆15Jun 24, 2026Updated last week
- ☆26May 19, 2026Updated last month
- a tool for using surfaces to explore volumetric data in napari☆20Jun 13, 2026Updated 2 weeks ago
- Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset☆34Sep 18, 2025Updated 9 months ago
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆31Jun 5, 2026Updated 3 weeks ago
- macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames☆10Jun 22, 2026Updated last week
- cryo-EM tomogram simulator☆31Jun 24, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 4 years ago
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆38Jun 5, 2026Updated 3 weeks ago
- Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories☆12Mar 28, 2017Updated 9 years ago
- ☆16Feb 4, 2017Updated 9 years ago
- Python scripts to manipulate Relion tomo STAR files and much more...☆15Mar 23, 2026Updated 3 months ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆41Jan 30, 2024Updated 2 years ago
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆43Jun 16, 2026Updated 2 weeks ago
- cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules☆10Mar 25, 2022Updated 4 years ago
- A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.☆17Mar 4, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Very simple script for EPU users which adds beam tilt classes to the star file☆11Nov 3, 2023Updated 2 years ago
- ☆14Oct 17, 2025Updated 8 months ago
- ☆11Mar 23, 2023Updated 3 years ago
- Useful aliases and startup settings for ChimeraX☆42May 14, 2026Updated last month
- ☆17May 11, 2026Updated last month
- cryo-ET particle picking by representation and metric learning☆44Nov 24, 2025Updated 7 months ago
- A software for membrane signal subtraction to facilitate high-resolution cryo-EM reconstruction of membrane proteins embedded in their na…☆14Sep 4, 2025Updated 9 months ago
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆29Jun 29, 2025Updated last year
- simplify the handling of large sets of Euler angles in Python☆32Feb 1, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- CryoET Data Portal☆30Updated this week
- Graphical user interface to integrate cryoEM flexibility analyses with ChimeraX☆24Sep 5, 2024Updated last year
- Template for creating a new python repository☆13Sep 28, 2025Updated 9 months ago
- Python scripts for easy RELION STAR file manipulation.☆26Mar 24, 2026Updated 3 months ago
- Live processing and real time reconstruction of cryo☆57May 11, 2026Updated last month
- Contextual Analysis Tools for cryoET and subtomogram averaging☆38Updated this week
- GPU-accelerated template matching for cryo-ET☆62Jun 5, 2026Updated 3 weeks ago