IMOD model files as pandas dataframes in Python
☆13Jun 26, 2025Updated last year
Alternatives and similar repositories for imodmodel
Users that are interested in imodmodel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SerialEM mdoc files as pandas dataframes☆14Feb 4, 2026Updated 7 months ago
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated last year
- ☆19Jan 23, 2026Updated 7 months ago
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Sep 1, 2026Updated 2 weeks ago
- Complementary tools for Relion tomo☆12Mar 9, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Scripts to make cryo-electron tomography a bit easier☆15Aug 7, 2026Updated last month
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated 2 years ago
- ☆85Updated this week
- a tool for using surfaces to explore volumetric data in napari☆22Jun 13, 2026Updated 3 months ago
- Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset☆34Sep 18, 2025Updated last year
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆33Jul 13, 2026Updated 2 months ago
- cryo-EM tomogram simulator☆34Sep 3, 2026Updated 2 weeks ago
- ☆28Updated this week
- macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames☆10Jul 20, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 5 years ago
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆40Jun 5, 2026Updated 3 months ago
- Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories☆12Mar 28, 2017Updated 9 years ago
- Python scripts to manipulate Relion tomo STAR files and much more...☆15Mar 23, 2026Updated 5 months ago
- ☆16Feb 4, 2017Updated 9 years ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆42Jan 30, 2024Updated 2 years ago
- ☆45Updated this week
- cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules☆10Mar 25, 2022Updated 4 years ago
- A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.☆18Mar 4, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GPU-accelerated template matching for cryo-ET☆65Updated this week
- Very simple script for EPU users which adds beam tilt classes to the star file☆11Nov 3, 2023Updated 2 years ago
- Generative model for reconstruction of structures from cryoET☆19Nov 6, 2025Updated 10 months ago
- cryo-ET particle picking by representation and metric learning☆47Nov 24, 2025Updated 9 months ago
- ☆14Oct 17, 2025Updated 11 months ago
- ☆18May 11, 2026Updated 4 months ago
- ☆11Mar 23, 2023Updated 3 years ago
- ☆16Updated this week
- A software for membrane signal subtraction to facilitate high-resolution cryo-EM reconstruction of membrane proteins embedded in their na…☆14Sep 4, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆30Jun 29, 2025Updated last year
- simplify the handling of large sets of Euler angles in Python☆33Feb 1, 2022Updated 4 years ago
- Miscellaneous scripts for processing cryo-ET data☆23Jul 29, 2026Updated last month
- Template for creating a new python repository☆13Sep 28, 2025Updated 11 months ago
- Segment Organelles from Electron Microscopy Datasets with Segment-Anything 2☆19Jun 23, 2026Updated 2 months ago
- Self-supervised deep learning framework for CryoET analysis☆20Updated this week
- Graphical user interface to integrate cryoEM flexibility analyses with ChimeraX☆24Sep 5, 2024Updated 2 years ago