πΆ Genome assembly with short sequence reads
β25Mar 10, 2026Updated 2 months ago
Alternatives and similar repositories for SSAKE
Users that are interested in SSAKE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mapping-free variant caller for short-read Illumina dataβ20Apr 2, 2020Updated 6 years ago
- Probabilistic single-individual haplotypingβ10Mar 15, 2019Updated 7 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS dataβ14Dec 24, 2024Updated last year
- MIRA sequence assemblerβ33Jan 2, 2025Updated last year
- βοΈ Genome assembly polishing & SNV detectionβ73May 7, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ascertained Sequentially Markovian Coalescentβ18Oct 22, 2025Updated 6 months ago
- Biological file format specimens for testing packages, and functions to assist in testing.β16Nov 18, 2025Updated 6 months ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.β14Nov 11, 2019Updated 6 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomesβ10Oct 16, 2024Updated last year
- Dockerised and simplified version of SeqWare-CGP-SomaticCoreβ14Mar 5, 2021Updated 5 years ago
- Hierarchical clustering of cgMLSTβ13Nov 20, 2023Updated 2 years ago
- Exome Copy Number Variation Polisher via Deep Learningβ18Jun 1, 2020Updated 5 years ago
- Identifying repeats in high-throughput sequencing dataβ16Apr 12, 2024Updated 2 years ago
- Profile HMM-based hybrid error correction algorithm for long readsβ21Aug 15, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Location of structural errors in a genome assembly and structural variations between a pair of genomesβ11Sep 27, 2019Updated 6 years ago
- Genomic signature interpretation tool for DNA double-strand break repair mechanismβ11Oct 8, 2025Updated 7 months ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.β11Dec 27, 2022Updated 3 years ago
- πRAILS and ππ¨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-fillingβ27Apr 1, 2026Updated last month
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.β78Jun 30, 2025Updated 10 months ago
- Fast implementation of the Neighbour-Joining method for phylogenetic inferenceβ18Sep 10, 2024Updated last year
- Convert .gbk or .embl to .gff (and optionally .fa) (required for QUAST)β17Jun 19, 2014Updated 11 years ago
- Read error correction tool for PacBio dataβ12Dec 11, 2024Updated last year
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are aβ¦β22Mar 9, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNAβ16Apr 13, 2021Updated 5 years ago
- C code to validate a fasta fileβ14Mar 2, 2021Updated 5 years ago
- Hierarchical Unique Bait Design for simultaneous and specific capture of known and novel targetsβ18Sep 19, 2023Updated 2 years ago
- file command's magic pattern file for bioinformaticsβ21Nov 25, 2015Updated 10 years ago
- A WGS de novo assembler based on the FMD-index for large genomesβ74Dec 6, 2013Updated 12 years ago
- plot genome alignment syntenyβ20May 25, 2020Updated 5 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogensβ39Apr 6, 2026Updated last month
- k-mer similarity analysis pipelineβ22Apr 30, 2026Updated 2 weeks ago
- cnv-seq with custom bugfixβ10Mar 23, 2013Updated 13 years ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- interactive barplot for amplicon sequencingβ13Dec 5, 2024Updated last year
- πScaffold genome sequence assemblies using linked or long read sequencing dataβ95Apr 1, 2026Updated last month
- Intra-species bacterial contamination detectionβ25Apr 13, 2026Updated last month
- β HLA predictions from NGS shotgun dataβ56Mar 27, 2026Updated last month
- Pipeline for analyzing rare mutations in metagenome-assembled genomesβ10Apr 4, 2025Updated last year
- β10Apr 10, 2016Updated 10 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiersβ35Feb 27, 2024Updated 2 years ago