wiedenhoeft / HaMMLET
Fast Bayesian Hidden Markov Model with Wavelet Compression
☆17Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for HaMMLET
- BitSeq code☆16Updated 3 years ago
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆27Updated 3 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆53Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆41Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 8 months ago
- Find nodes in hierarchical clustering that are statistically significant☆28Updated 7 years ago
- Tools used to analyze data from nanopore-based experiments.☆29Updated 9 years ago
- ☆21Updated 9 years ago
- Tree hidden Markov model for learning epigenetic states in multiple cell types☆28Updated 11 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Code accompanying the publication for compressed graph annotation☆13Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- Lightweight header-only C++ library for loading and traversing trees☆10Updated 3 months ago
- run-length BWT tools for genomic sequences☆18Updated 2 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated last year
- Fishers Exact Test for Python (Cython)☆64Updated 2 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 5 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- A Matlab package to perform Pareto Task Inference (ParTI), which infers tasks from high-dimensional datasets.☆10Updated 4 years ago
- MEM mapper prototype☆13Updated 3 years ago
- Learn interpretable computational phenotyping models from k-merized genomic data☆51Updated 2 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 2 years ago
- ☆10Updated 3 years ago
- GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging☆64Updated 2 months ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago