wiedenhoeft / HaMMLET
Fast Bayesian Hidden Markov Model with Wavelet Compression
☆17Updated 5 years ago
Alternatives and similar repositories for HaMMLET:
Users that are interested in HaMMLET are comparing it to the libraries listed below
- ☆21Updated 9 years ago
- ☆18Updated 6 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)☆9Updated 6 years ago
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆27Updated 3 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- ☆10Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆38Updated 11 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆22Updated 3 years ago
- Searching large collections of sequencing data with genome-scale queries☆11Updated last week
- BitSeq code☆16Updated 3 years ago
- Simple examples of Monte Carlo and MCMC☆19Updated 10 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Updated 7 years ago
- ☆13Updated 5 years ago
- run-length BWT tools for genomic sequences☆19Updated 2 years ago
- Lightweight header-only C++ library for loading and traversing trees☆15Updated 3 weeks ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated 8 months ago
- Stray has been renamed fido, development continues at jsilve24/fido☆23Updated 3 years ago
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆13Updated 9 years ago
- ☆12Updated 9 years ago
- smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.☆11Updated this week