wiedenhoeft / HaMMLET
Fast Bayesian Hidden Markov Model with Wavelet Compression
☆18Updated 4 years ago
Related projects: ⓘ
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆53Updated 4 years ago
- BitSeq code☆16Updated 3 years ago
- Find nodes in hierarchical clustering that are statistically significant☆28Updated 6 years ago
- ☆20Updated 9 years ago
- We have moved to https://github.com/limix/limix.☆23Updated 7 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆27Updated 2 years ago
- Jupyter notebooks for demo/projects, now that github supports them☆8Updated 4 years ago
- RSS: Regression with Summary Statistics☆50Updated this week
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 6 months ago
- Simple examples of Monte Carlo and MCMC☆19Updated 10 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 6 years ago
- Simply feedforward neural network☆19Updated 7 years ago
- Code accompanying the publication for compressed graph annotation☆13Updated 5 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12Updated 11 years ago
- Tools used to analyze data from nanopore-based experiments.☆28Updated 9 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆24Updated 4 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆38Updated 5 months ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆41Updated 4 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆39Updated last year
- ☆11Updated 7 years ago
- ☆18Updated 6 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 5 years ago
- R-package for elastic net regularized regression with zero sum constraint☆23Updated 4 months ago
- Yet Another Motif Discovery Algorithm☆51Updated 5 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆58Updated 2 months ago
- pythonic wrapper for htslib☆24Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Shape analysis of high-throughput data☆19Updated 8 years ago