wiedenhoeft / HaMMLETLinks
Fast Bayesian Hidden Markov Model with Wavelet Compression
☆17Updated 5 years ago
Alternatives and similar repositories for HaMMLET
Users that are interested in HaMMLET are comparing it to the libraries listed below
Sorting:
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- BitSeq code☆16Updated 4 years ago
- ☆21Updated 10 years ago
- ☆23Updated 4 years ago
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆27Updated 3 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆39Updated last year
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆26Updated 3 years ago
- Tools used to analyze data from nanopore-based experiments.☆30Updated 10 years ago
- Hominid: host-microbiome interaction identification☆16Updated last year
- Learn interpretable computational phenotyping models from k-merized genomic data☆52Updated 3 years ago
- Simple examples of Monte Carlo and MCMC☆20Updated 11 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- Fast and memory-efficient sequencing error corrector☆93Updated last year
- RNA-Seq☆24Updated 7 years ago
- ☆45Updated 9 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 8 years ago
- Fast and accurate set similarity estimation via containment min hash☆43Updated last year
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- Liability Estimation for Case-Control Studies☆10Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- Find nodes in hierarchical clustering that are statistically significant☆28Updated 7 years ago
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆13Updated 9 years ago
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆22Updated 8 months ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆21Updated 7 years ago
- ☆15Updated 7 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago