Bioconductor / Biostrings

Related projects ⓘ

Alternatives and complementary repositories for Biostrings

• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆31Updated last year
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆45Updated this week
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆26Updated last year
• Bioconductor / SummarizedExperiment
  A container (S4 class) for matrix-like assays
  ☆33Updated 3 weeks ago
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆55Updated last month
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆68Updated last year
• gladkia / igvShiny
  An htmlwidget version of igv, for RStudio and Shiny apps
  ☆36Updated this week
• tidyomics / tidy-genomics-talk
  ☆16Updated last year
• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆26Updated 5 years ago
• Bioconductor / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated 3 weeks ago
• ELTEbioinformatics / mulea
  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
  ☆24Updated this week
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆53Updated 3 months ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆30Updated this week
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 4 years ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆20Updated 9 months ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆24Updated 8 months ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆27Updated last year
• csoneson / treeclimbR
  ☆19Updated 2 weeks ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆70Updated last year
• GMOD / JBrowseR
  R interface to the JBrowse 2 Linear Genome View.
  ☆35Updated 8 months ago
• brennanpincardiff / drawProteins
  Creating package to draw proteins from Uniprot API
  ☆34Updated 8 months ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆70Updated this week
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆76Updated last month
• emmanuelparadis / ape
  analysis of phylogenetics and evolution
  ☆53Updated last week
• neurogenomics / orthogene
  🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…
  ☆40Updated 11 months ago
• microbiome / mia
  Microbiome analysis
  ☆50Updated this week
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last month
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆36Updated 2 weeks ago
• lvulliard / BioCircos.R
  Htmlwidgets binding R commands to the BioCircos.js library
  ☆37Updated 5 years ago
• RGLab / ggcyto
  Visualize Cytometry data with ggplot2
  ☆56Updated 8 months ago