Efficient manipulation of biological strings
☆70Sep 5, 2026Updated last month
Alternatives and similar repositories for Biostrings
Users that are interested in Biostrings are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Foundation of vector-like and list-like containers in Bioconductor☆18Sep 15, 2026Updated 3 weeks ago
- Representation and manipulation of genomic intervals☆47Sep 2, 2026Updated last month
- Foundation of integer range manipulation in Bioconductor☆24Aug 27, 2026Updated last month
- ☆21Oct 27, 2023Updated 2 years ago
- A unified framework for working transparently with on-disk and in-memory array-like datasets☆29Sep 30, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects☆12Apr 29, 2026Updated 5 months ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- Compact Package Representations☆31Jun 11, 2026Updated 4 months ago
- High-performance sparse data representation and manipulation in R☆13Sep 30, 2026Updated last week
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆31Apr 28, 2026Updated 5 months ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 8 months ago
- Query the gene models of a given organism/assembly☆26Aug 27, 2026Updated last month
- ☆11May 10, 2025Updated last year
- Annotation of Genetic Variants☆32Jul 28, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 4 months ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆11Aug 22, 2026Updated last month
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Oct 21, 2021Updated 4 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Miscellaneous functions for metagenomic analysis.☆53May 14, 2026Updated 4 months ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆24Jun 2, 2026Updated 4 months ago
- tldr client for R☆20Dec 27, 2022Updated 3 years ago
- 😠 htmlwidget R bindings for UpSet.js for rendering UpSet plots, Euler, and Venn Diagrams☆36Apr 20, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Draw heatmap simply using a tidy data frame☆364Feb 7, 2026Updated 8 months ago
- Feature flags in R☆11Mar 22, 2025Updated last year
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆21Jul 19, 2023Updated 3 years ago
- Material for the RNAseq course☆10Aug 8, 2019Updated 7 years ago
- Needleman-Wunsch Algorithm for global alignment and local alignment☆12Feb 12, 2020Updated 6 years ago
- Publication-quality sequence logos in R☆231Feb 14, 2026Updated 7 months ago
- BLAST-like algorithm for R based on the nsearch library (https://github.com/stevschmid/nsearch)☆15Apr 24, 2026Updated 5 months ago
- ☆17Jul 3, 2018Updated 8 years ago
- Analysing epidemic trends using AutoML approaches.☆20Apr 23, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE☆15Feb 26, 2021Updated 5 years ago
- VDJ Clonotyping & Analysis Tools☆50Mar 7, 2025Updated last year
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- Bioconductor facilities for parallel evaluation☆69Apr 29, 2026Updated 5 months ago
- A grammar of genomic data transformation☆156Jul 30, 2026Updated 2 months ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆11Sep 15, 2023Updated 3 years ago