Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the-art models.
☆125Dec 17, 2021Updated 4 years ago
Alternatives and similar repositories for bio-ner
Users that are interested in bio-ner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyTorch Implementation of BioBERT☆351Jun 24, 2023Updated 3 years ago
- This repository contains the data and code created under the project NLP4Rare-cm-uc3m.☆10Sep 14, 2021Updated 5 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆136Jul 25, 2024Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆206Mar 28, 2024Updated 2 years ago
- Recognize bio-medical entities from a text corpus☆134Aug 11, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 3xtudio is a web-based visual editor for RML mappings☆21Feb 15, 2026Updated 7 months ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆157Sep 13, 2023Updated 3 years ago
- Named Entity Recognition (NER) of diseases☆13Feb 10, 2022Updated 4 years ago
- Universal LLM security auditor with automated jailbreak testing, DSPy optimization, and OWASP 2025-aligned attack patterns☆22Oct 23, 2025Updated 11 months ago
- ☆38Oct 8, 2021Updated 5 years ago
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.☆14Nov 24, 2023Updated 2 years ago
- Data and codes for BioBERT-MRC☆11Oct 5, 2021Updated 5 years ago
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,213Aug 13, 2023Updated 3 years ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Extrator de entidades mencionadas em notícias da mídia☆15May 25, 2021Updated 5 years ago
- ☆26Apr 15, 2023Updated 3 years ago
- Experiment on NER task using Huggingface state-of-the-art Transformers Natural Language Models library☆40Jul 22, 2023Updated 3 years ago
- Translate YARRRML into easy-to-read [R2]RML mappings☆31Jun 8, 2026Updated 4 months ago
- E3C is a freely available multilingual corpus (Italian, English, French, Spanish, and Basque) of semantically annotated clinical narrativ…☆30Jan 18, 2024Updated 2 years ago
- ☆21Aug 30, 2022Updated 4 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆21Jun 12, 2023Updated 3 years ago
- Python control flow parser☆11May 7, 2022Updated 4 years ago
- QuantificationLib is an open-source library for quantification learning.☆13Apr 6, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Library of Integrated Cellular Signatures L1000☆31Apr 21, 2022Updated 4 years ago
- GERNERMED++ is a transfer-learning-based open neural NER model for medical entities designed for German data.☆10Oct 20, 2023Updated 2 years ago
- ☆15Oct 17, 2023Updated 2 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,995Dec 4, 2025Updated 10 months ago
- This is a LaTeX template for JAMIA.☆29May 4, 2024Updated 2 years ago
- Python scripts to parse Pokemon info from serebii.net☆10May 22, 2023Updated 3 years ago
- Triplestore wrapper package for Python.☆16Oct 5, 2026Updated last week
- The proposed idea is to create a health care chabot system using Artificial Intelligence (AI) that can diagnose the disease and provide…☆20Aug 25, 2021Updated 5 years ago
- a customzable pipeline for information extraction☆18Sep 14, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion☆29Jan 30, 2022Updated 4 years ago
- Distantly Supervised Biomedical Named Entity Recognition with Dictionary Expansion: https://ieeexplore.ieee.org/document/8983212☆12Jun 4, 2020Updated 6 years ago
- Drug repurposing for COVID-19 using literature-based discovery☆32Sep 6, 2022Updated 4 years ago
- A 2D shoot 'em up with tiled levels. Made with HaxeFlixel.☆11Mar 24, 2015Updated 11 years ago
- GPTNERMED is a language model-generated, synthetic dataset and an open neural NER model for medical entities designed for German data.☆15Oct 5, 2023Updated 3 years ago
- [DEPRECATED] A Rails engine for orcid.org integration.☆14Jul 24, 2017Updated 9 years ago
- ☆26Jan 14, 2021Updated 5 years ago