librairy / bio-nerLinks
Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the-art models.
☆123Updated 4 years ago
Alternatives and similar repositories for bio-ner
Users that are interested in bio-ner are comparing it to the libraries listed below
Sorting:
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆201Updated last year
- PyTorch Implementation of BioBERT☆348Updated 2 years ago
- ☆152Updated 2 years ago
- Recognize bio-medical entities from a text corpus☆130Updated 2 years ago
- Tools for curating biomedical training data for large-scale language modeling☆488Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆341Updated 4 years ago
- AIONER☆62Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆153Updated 2 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Updated 3 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 4 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆585Updated 2 years ago
- a module to calculate the MeSH similarity☆27Updated 4 years ago
- Repository for student projects within biomedical text mining from Lund University☆57Updated 2 years ago
- Fast, world class biomedical NER☆87Updated 9 months ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆139Updated 4 months ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆213Updated 2 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- SciFive: a text-text transformer model for biomedical literature☆98Updated last year
- a customzable pipeline for information extraction☆18Updated 7 months ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆178Updated 2 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Updated last year
- Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…☆573Updated 3 months ago
- ☆28Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆33Updated 2 years ago
- ☆221Updated last year
- all scripts used in gatortron project☆130Updated 2 years ago
- Knowledge graphs generation from unstructured text.☆71Updated 11 months ago
- ☆70Updated 3 years ago