librairy / bio-ner
Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the-art models.
☆115Updated 3 years ago
Alternatives and similar repositories for bio-ner:
Users that are interested in bio-ner are comparing it to the libraries listed below
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆186Updated last year
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- PyTorch Implementation of BioBERT☆326Updated last year
- ☆152Updated last year
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- AIONER☆54Updated 9 months ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆164Updated last year
- Recognize bio-medical entities from a text corpus☆120Updated last year
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆160Updated 3 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆187Updated 2 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- NER and Relation Extraction from Electronic Health Records (EHR).☆88Updated 3 years ago
- PubMed PICO Element Detection Dataset☆56Updated 6 years ago
- Tools for curating biomedical training data for large-scale language modeling☆477Updated 5 months ago
- ☆32Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- ☆24Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆326Updated 3 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆294Updated 3 years ago
- SciFive: a text-text transformer model for biomedical literature☆94Updated 11 months ago
- A Serverless Text Annotation Tool for Corpus Development☆55Updated 2 months ago
- Repository for student projects within biomedical text mining from Lund University☆54Updated last year
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆54Updated 2 years ago
- ☆67Updated 2 years ago
- EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework☆10Updated 8 months ago
- A near real-time named-entity recognizer☆59Updated 11 months ago