Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the-art models.
☆124Dec 17, 2021Updated 4 years ago
Alternatives and similar repositories for bio-ner
Users that are interested in bio-ner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains the data and code created under the project NLP4Rare-cm-uc3m.☆10Sep 14, 2021Updated 4 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆136Jul 25, 2024Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆205Mar 28, 2024Updated 2 years ago
- Recognize bio-medical entities from a text corpus☆134Aug 11, 2023Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆157Sep 13, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆20Sep 28, 2021Updated 4 years ago
- Named Entity Recognition (NER) of diseases☆13Feb 10, 2022Updated 4 years ago
- Serverless AI document extraction using Form Recognizer, Azure Functions, and Azure Blob Storage.☆11May 23, 2024Updated 2 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Apr 18, 2022Updated 4 years ago
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.☆14Nov 24, 2023Updated 2 years ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆12Dec 10, 2023Updated 2 years ago
- Data and codes for BioBERT-MRC☆11Oct 5, 2021Updated 4 years ago
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,206Aug 13, 2023Updated 3 years ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Prolog and C sources for MetaMap Named Entity Recognizer☆17Feb 20, 2025Updated last year
- ☆26Apr 15, 2023Updated 3 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆18Sep 10, 2024Updated last year
- Notebook for BERT medical named entity recognition☆44Sep 25, 2022Updated 3 years ago
- A Collection of Useful Notebooks to help in Feature Engineering.☆11Nov 27, 2020Updated 5 years ago
- Github repo for the Evaluation of ChatGPT Family of Models for Biomedical Reasoning and Classification, code and data | Paper: https://ar…☆14Apr 6, 2023Updated 3 years ago
- Python control flow parser☆11May 7, 2022Updated 4 years ago
- Library of Integrated Cellular Signatures L1000☆31Apr 21, 2022Updated 4 years ago
- GERNERMED++ is a transfer-learning-based open neural NER model for medical entities designed for German data.☆10Oct 20, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Feb 18, 2024Updated 2 years ago
- This is a LaTeX template for JAMIA.☆28May 4, 2024Updated 2 years ago
- Python scripts to parse Pokemon info from serebii.net☆10May 22, 2023Updated 3 years ago
- DrBERT: A Robust Pre-trained Model in French for Biomedical and Clinical domains☆22Feb 7, 2024Updated 2 years ago
- a customzable pipeline for information extraction☆18Mar 23, 2026Updated 5 months ago
- [KDD'25] Code of "Bridging Textual-Collaborative Gap through Semantic Codes for Sequential Recommendation".☆18Jul 3, 2026Updated 2 months ago
- The proposed idea is to create a health care chabot system using Artificial Intelligence (AI) that can diagnose the disease and provide…☆20Aug 25, 2021Updated 5 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆32Mar 1, 2017Updated 9 years ago
- RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion☆29Jan 30, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Distantly Supervised Biomedical Named Entity Recognition with Dictionary Expansion: https://ieeexplore.ieee.org/document/8983212☆12Jun 4, 2020Updated 6 years ago
- Brazilian Tertiary Care Dataset☆19Dec 14, 2022Updated 3 years ago
- A 2D shoot 'em up with tiled levels. Made with HaxeFlixel.☆11Mar 24, 2015Updated 11 years ago
- GPTNERMED is a language model-generated, synthetic dataset and an open neural NER model for medical entities designed for German data.☆15Oct 5, 2023Updated 2 years ago
- BioELECTRA☆51Oct 27, 2021Updated 4 years ago
- ☆17Mar 11, 2023Updated 3 years ago
- Tutorials on implementing a few sequence-to-sequence (seq2seq) models with PyTorch and TorchText.☆11Mar 15, 2023Updated 3 years ago