dreji18 / Bio-Epidemiology-NERLinks
Recognize bio-medical entities from a text corpus
☆126Updated 2 years ago
Alternatives and similar repositories for Bio-Epidemiology-NER
Users that are interested in Bio-Epidemiology-NER are comparing it to the libraries listed below
Sorting:
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆152Updated last year
- Tools for curating biomedical training data for large-scale language modeling☆483Updated 8 months ago
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆273Updated last year
- A project for developing transformer-based models for clinical relation extraction☆129Updated 2 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆162Updated 4 years ago
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆118Updated 3 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆82Updated 3 months ago
- ☆218Updated 8 months ago
- SciFive: a text-text transformer model for biomedical literature☆97Updated last year
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆193Updated last year
- ☆99Updated 3 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆198Updated 2 years ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆95Updated last year
- A collection of papers on automated medical coding from free-texts☆145Updated 8 months ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 3 years ago
- NER and Relation Extraction from Electronic Health Records (EHR).☆89Updated 3 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆333Updated 3 years ago
- all scripts used in gatortron project☆122Updated last year
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆76Updated 2 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Updated 3 years ago
- ☆62Updated 2 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆170Updated 2 years ago
- Medical Concept Annotation Tool☆506Updated last month
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆71Updated last year
- ☆153Updated last year
- This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in t…☆19Updated last year
- Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites☆416Updated last year
- Transformers for Clinical NLP☆25Updated 3 weeks ago