Alternatives and similar repositories for MASA-CUDAlign

Users that are interested in MASA-CUDAlign are comparing it to the libraries listed below

• NVIDIA-Genomics-Research / racon-gpu
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆17Updated 5 years ago
• AnyDSL / anyseq
  genome sequence alignment
  ☆14Updated 6 years ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago
• ekg / smithwaterman
  smith-waterman-gotoh alignment algorithm
  ☆17Updated 8 years ago
• ratschlab / graph_annotation
  Code accompanying the publication for compressed graph annotation
  ☆13Updated 6 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 6 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆22Updated 3 years ago
• broadinstitute / firepony
  Efficient base quality score recalibrator for NGS data
  ☆24Updated 10 years ago
• aquaskyline / Skyhawk
  An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
  ☆35Updated 2 years ago
• aritra90 / TeraPCA
  TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…
  ☆15Updated 3 years ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 7 months ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 5 years ago
• gersteinlab / SVFX
  Machine learning framework to quantify pathogenicity of structural variants
  ☆12Updated 5 years ago
• ljdursi / poapy
  A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
  ☆75Updated last year
• broadinstitute / dsde-deep-learning
  DSDE Deep Learning Club
  ☆40Updated 6 years ago
• pepebonet / DeepMP
  DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data
  ☆28Updated 3 years ago
• kundajelab / seqdataloader
  Sequence data label generation and ingestion into deep learning models
  ☆12Updated 4 years ago
• vpc-ccg / lordfast
  Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
  ☆40Updated 6 years ago
• quim0 / WFA-GPU
  GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment
  ☆37Updated 8 months ago
• lh3 / gwfa
  Proof-of-concept implementation of GWFA for sequence-to-graph alignment
  ☆56Updated last year
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last month
• etirouthier / keras_dna
  ☆26Updated 4 years ago
• IntelLabs / Open-Omics-Acceleration-Framework
  Intel lab's open sourced data science framework for accelerating digital biology
  ☆49Updated last week
• biointec / halvade
  Parallel read alignment and variant calling using MapReduce
  ☆18Updated 6 years ago
• dkoslicki / CMash
  Fast and accurate set similarity estimation via containment min hash
  ☆42Updated last year
• TravisWheelerLab / AvxWindowFmIndex
  A fast, AVX2 and ARM Neon accelerated FM index library
  ☆36Updated last year
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• jpritt / boiler
  Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments
  ☆13Updated 9 years ago
• bergmanlab / ngs_te_mapper
  Software for detecting transposable element insertions from next-generation sequencing data
  ☆14Updated 4 years ago
• gifford-lab / Keras-genomics
  Perform hyper-parameter tuning, training, testing and prediction with Keras
  ☆44Updated 7 years ago