edanssandes / MASA-CUDAlignLinks
The MASA-CUDAlign extension is used with the MASA architecture to align DNA sequences of unrestricted size with the Smith-Waterman/Needleman-Wunsch algorithm combined with Myers-Miller. It uses the NVIDIA CUDA GPU platform for accelerating the computation time.
☆28Updated 3 years ago
Alternatives and similar repositories for MASA-CUDAlign
Users that are interested in MASA-CUDAlign are comparing it to the libraries listed below
Sorting:
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Updated 5 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 5 months ago
- Code accompanying the publication for compressed graph annotation☆13Updated 6 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- genome sequence alignment☆14Updated 6 years ago
- smith-waterman-gotoh alignment algorithm☆17Updated 8 years ago
- A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes☆74Updated last year
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago
- Pipelines for processing malaria parasite and mosquito genome sequence data.☆14Updated 11 months ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆60Updated last year
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆62Updated last week
- Global alignment and alignment extension☆137Updated 2 years ago
- Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly☆166Updated this week
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Updated 3 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring ve…☆43Updated 3 years ago
- ☆50Updated 3 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- ☆25Updated 4 years ago
- DSDE Deep Learning Club☆40Updated 6 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last month
- Sequence data label generation and ingestion into deep learning models☆12Updated 3 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Genetics training camp☆21Updated 5 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated last year