Protein-Engineering-Framework / PyPEF
PyPEF – Pythonic Protein Engineering Framework
☆23Updated 2 months ago
Alternatives and similar repositories for PyPEF:
Users that are interested in PyPEF are comparing it to the libraries listed below
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆27Updated 8 months ago
- PyDock Tutorial☆30Updated 6 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆38Updated last week
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆26Updated 10 months ago
- ☆49Updated 8 months ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆23Updated 2 weeks ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆36Updated 2 months ago
- Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model☆16Updated 3 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆30Updated 2 weeks ago
- Some scripts that I keep using over and over.☆18Updated last month
- Making Protein folding accessible to all!☆21Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆41Updated 2 months ago
- ☆36Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆48Updated this week
- ☆41Updated 5 months ago
- Efficient manipulation of protein structures in Python☆51Updated 3 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆37Updated 3 months ago
- Some Rosetta Scripts that allow for various simple tasks☆13Updated 5 years ago
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1☆16Updated 3 years ago
- ☆38Updated last year
- Small_molecule_binder_design_use_pseudocycles☆18Updated 3 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆25Updated 4 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆26Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆24Updated 7 months ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆22Updated 5 years ago
- ☆61Updated last week
- An accurate and efficient protein sequence design approach☆22Updated last year
- Extension of ThermoMPNN for double mutant predictions☆24Updated last month
- ☆61Updated 2 months ago