AIH-SGML / mixmil
Code for the paper: Mixed Models with Multiple Instance Learning
☆19Updated 6 months ago
Alternatives and similar repositories for mixmil:
Users that are interested in mixmil are comparing it to the libraries listed below
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆46Updated 7 months ago
- ☆54Updated 2 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 3 years ago
- A deep-learning framework for multi-omics integration☆24Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- Learning cell communication from spatial graphs of cells☆105Updated last year
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆29Updated last week
- Conditional out-of-distribution prediction☆56Updated 5 months ago
- ☆28Updated 3 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆78Updated 3 weeks ago
- Create cell sentences from sequencing data☆21Updated 5 months ago
- a unified single-cell data integration framework by optimal transport☆33Updated 3 months ago
- ☆64Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆49Updated 10 months ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆11Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆93Updated 5 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆37Updated 2 years ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆62Updated 2 weeks ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated this week
- ☆39Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆34Updated 2 weeks ago
- ☆27Updated 11 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆71Updated last year
- ☆17Updated 3 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆58Updated 8 months ago
- Reproducing the experiments of the DestVI paper☆17Updated 2 years ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆124Updated 2 months ago
- scPretrain: Multi-task self-supervised learning for cell type classification☆22Updated 3 years ago
- Spatially aware dimension reduction for spatial transcriptomics.☆43Updated 9 months ago