tothuhien / Rlsd2Links
An R-wrapper for lsd2
☆9Updated 2 years ago
Alternatives and similar repositories for Rlsd2
Users that are interested in Rlsd2 are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆25Updated last year
- ☆17Updated this week
- ☆19Updated 11 months ago
- ☆12Updated 6 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆38Updated 3 weeks ago
- Estimating time trees from very large phylogenies☆26Updated 10 months ago
- ☆11Updated 3 months ago
- ☆16Updated 2 months ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆18Updated last month
- ☆11Updated 4 years ago
- R package for microbial pangenomics☆23Updated 3 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago
- ☆17Updated 11 months ago
- ☆9Updated 2 years ago
- ☆16Updated 3 years ago
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆13Updated last year
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 11 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- Plot microbiome time series in parallel☆26Updated last year
- A phylogeny dating method using least-squares algorithms and criteria☆26Updated 7 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated last year
- ☆22Updated 2 years ago
- Influenza data pipeline to automate genotyping assignment☆33Updated this week
- Surveillance of pathogens using population genomics and sequencing☆24Updated this week
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated 11 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆15Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 3 years ago