zwallen / Wallen_DAMethodCompare_2021
Repository for data and code used in the manuscript "Comparison study of differential abundance testing methods using two large Parkinson disease gut microbiome datasets derived from 16S amplicon sequencing"
☆8Updated 3 years ago
Alternatives and similar repositories for Wallen_DAMethodCompare_2021:
Users that are interested in Wallen_DAMethodCompare_2021 are comparing it to the libraries listed below
- Dadaist2 🟨 Highway to R☆13Updated last week
- Non parametric differential abundance tests for microbiome data☆9Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 9 months ago
- Working with the outputs of sourmash in R☆26Updated last year
- ☆20Updated 4 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last week
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- tidyMicro GitHup Repository☆17Updated 3 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆14Updated 2 years ago
- ☆13Updated 5 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Plot microbiome time series in parallel☆25Updated last year
- microbial association network clustering algorithm☆13Updated last year
- ☆26Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- ☆17Updated last month
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 11 months ago
- ☆14Updated 3 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 7 months ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆12Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 6 months ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 4 months ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 2 weeks ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 10 months ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆10Updated 2 weeks ago