zwallen / Wallen_DAMethodCompare_2021
Repository for data and code used in the manuscript "Comparison study of differential abundance testing methods using two large Parkinson disease gut microbiome datasets derived from 16S amplicon sequencing"
☆8Updated 2 years ago
Alternatives and similar repositories for Wallen_DAMethodCompare_2021:
Users that are interested in Wallen_DAMethodCompare_2021 are comparing it to the libraries listed below
- Dadaist2 🟨 Highway to R☆13Updated 2 weeks ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 8 months ago
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- ☆13Updated 4 years ago
- Non parametric differential abundance tests for microbiome data☆9Updated 3 years ago
- Working with the outputs of sourmash in R☆26Updated last year
- accessory functions for processing microbial community data☆12Updated 2 years ago
- A microbiome analysis toolkit for R☆21Updated last year
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Updated last month
- microbiome data simulation package☆20Updated 3 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- tidyMicro GitHup Repository☆18Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆10Updated 8 months ago
- A functional profiler for metagenomes using FracMinHash☆15Updated last month
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆14Updated 2 years ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆11Updated 6 months ago
- MAG Circularization Method☆33Updated 2 years ago
- microbial association network clustering algorithm☆13Updated last year
- functions for analyzing phyloseq data☆26Updated 2 weeks ago
- Functions to manipulate and visualize microbial community data☆11Updated last year
- ☆16Updated this week
- R package for microbial pangenomics☆21Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 6 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆36Updated 10 months ago