barakbri / dacomp
Non parametric differential abundance tests for microbiome data
☆9Updated 3 years ago
Alternatives and similar repositories for dacomp:
Users that are interested in dacomp are comparing it to the libraries listed below
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- ☆20Updated 4 years ago
- ☆26Updated last year
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 5 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆14Updated 2 years ago
- Linear Decomposition Model☆24Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Repository for data and code used in the manuscript "Comparison study of differential abundance testing methods using two large Parkinson…☆8Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- functions for analyzing phyloseq data☆26Updated last month
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Working with the outputs of sourmash in R☆26Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated 10 months ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆35Updated 9 years ago
- selbal: selection of balances for microbial signatures☆31Updated last month
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- ☆13Updated 5 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 11 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆22Updated 2 years ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆9Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Updated 3 weeks ago
- ☆12Updated 7 months ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago