A novel, effective and unified AI framework for alignment-free discovery of novel CRISPR-Cas systems with self-processing precursor CRISPR RNA (pre-crRNA) capability utilizing protein foundation models.
☆11Sep 30, 2025Updated last year
Alternatives and similar repositories for CHOOSER
Users that are interested in CHOOSER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Mar 6, 2025Updated last year
- ☆12Apr 22, 2025Updated last year
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆25Dec 20, 2024Updated last year
- A high-precision protein classification model☆11Jul 17, 2025Updated last year
- Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing☆18Jun 6, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Snakemake implementation of protein structure alignment software DaliLite v5☆16Mar 12, 2025Updated last year
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆14May 10, 2025Updated last year
- Mining CRISPRs in Environmental Datasets☆128Feb 10, 2023Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆24Mar 20, 2026Updated 7 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 8 months ago
- ☆10Sep 19, 2020Updated 6 years ago
- ☆25Aug 20, 2018Updated 8 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Aug 8, 2026Updated 2 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆112Sep 15, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆23Sep 9, 2025Updated last year
- ☆11Aug 2, 2024Updated 2 years ago
- Fast protein domain structure embedding+search tool☆31Sep 21, 2025Updated last year
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 5 years ago
- ☆10Jul 30, 2024Updated 2 years ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆106Jul 11, 2023Updated 3 years ago
- ALignment Transformation EnviRonment☆12May 8, 2018Updated 8 years ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆29May 26, 2026Updated 4 months ago
- ☆33Jul 27, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Codebase for the paper "Systematic comparison of Generative AI-Protein Models" by Alexander J Barnett, Rajendra KC, Pratikshya Pandey, P…☆10Nov 5, 2024Updated last year
- Real-time structure motif searching in protein 3D structures using an inverted index strategy☆16Sep 13, 2026Updated last month
- An atlas of CRISPR-Cas systems from systematic genome mining☆31Aug 5, 2025Updated last year
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆33Sep 1, 2023Updated 3 years ago
- ☆10Sep 27, 2022Updated 4 years ago
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- Notebooks and files from the paper De novo Design and Bioactivity Prediction of SARS-CoV-2 Main Protease Inhibitors using Recurrent Neura…☆14Jan 13, 2023Updated 3 years ago
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- baseline method for CROCS 2024☆10Jan 24, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 可能是全网唯一的使用Python语言的PAT甲级题解☆46Sep 7, 2019Updated 7 years ago
- ☆19Jul 1, 2026Updated 3 months ago
- ☆11Jan 24, 2023Updated 3 years ago
- This is a repository for paper "Enantioselectivity prediction of pallada-electrocatalysed C–H activation using transition state knowledge…☆11Feb 8, 2024Updated 2 years ago
- ☆12Jan 5, 2023Updated 3 years ago
- cluster text embeddings with DBSCAN and HDBSCAN — parameter sweep, Excel export☆16Feb 21, 2026Updated 8 months ago
- ☆12May 12, 2025Updated last year