westlake-repl / ProteinLM-TDG2-Mutation
Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing
☆17Updated 10 months ago
Alternatives and similar repositories for ProteinLM-TDG2-Mutation:
Users that are interested in ProteinLM-TDG2-Mutation are comparing it to the libraries listed below
- PLM based active learning model for protein engineering☆78Updated 8 months ago
- ☆35Updated 2 years ago
- ☆66Updated 7 months ago
- Protein language model trained on coding DNA☆46Updated 6 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆56Updated 2 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆104Updated 7 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 3 months ago
- RNA Multiple Sequence Alignment☆39Updated last year
- A generalized enzyme kinetics parameter prediction model.☆37Updated 5 months ago
- ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.☆47Updated last month
- Text-guided protein design☆47Updated 2 weeks ago
- Making Protein Modeling Accessible to All Biologists☆106Updated this week
- Pro-FSFP: Few-Shot Protein Fitness Prediction☆80Updated 3 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆71Updated 4 months ago
- ☆30Updated 8 months ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆41Updated 9 months ago
- Learning the language of protein-protein interactions☆70Updated this week
- Protein Design by Machine Learning guided Directed Evolution☆37Updated 3 weeks ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆48Updated 4 months ago
- ColabFold protocol☆50Updated 6 months ago
- The first large protein language model trained follows structure instructions.☆79Updated 10 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆58Updated 10 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆54Updated last week
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆42Updated 3 months ago
- ☆49Updated 3 weeks ago
- ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning☆100Updated last week
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆30Updated 3 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆112Updated last month
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆59Updated 8 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆71Updated last year