zeissmicroscopy / ZEN_Python_OAD_workshopLinks
Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics
☆16Updated last year
Alternatives and similar repositories for ZEN_Python_OAD_workshop
Users that are interested in ZEN_Python_OAD_workshop are comparing it to the libraries listed below
Sorting:
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 3 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 6 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated last month
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆32Updated 3 weeks ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last month
- Various parts made for fluorescence microscopy + optics work☆16Updated 5 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 8 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- Process images using SimpleITK in napari☆21Updated last month
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆42Updated 8 months ago
- Resources for teaching/preparing to teach bioimage analysis☆56Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- ☆16Updated 2 years ago
- Time arrow prediction for live-cell microscopy☆18Updated 11 months ago
- ilastik plugin for napari☆14Updated last year
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 2 months ago
- ☆18Updated last month
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated this week
- Browse your OMERO database from within napari.☆37Updated this week
- Use ImageJ functionality from napari☆31Updated 2 months ago
- ☆39Updated 10 months ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- Course on Deep Learning for imaging using PyTorch☆13Updated 3 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 7 months ago
- Multiple file format reading directly into napari using pure Python☆36Updated 10 months ago
- A platform for compiling, analyzing, and exploring tracking data☆44Updated 2 months ago