AlexandrovLab / SigProfilerSimulatorLinks
SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
☆20Updated this week
Alternatives and similar repositories for SigProfilerSimulator
Users that are interested in SigProfilerSimulator are comparing it to the libraries listed below
Sorting:
- A software package for detection of copy number alterations from tumor samples☆12Updated 10 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- A bioinformatics tool for SV detection and virus integration discovery☆21Updated 8 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- DriverPower☆26Updated 11 months ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Comprehensive analysis of small RNA sequencing data☆34Updated 7 months ago
- Utility functions for FACETS☆39Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- SV clustering☆31Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- ☆18Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 4 months ago
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- ☆33Updated 3 years ago
- ☆26Updated last year
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 5 months ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Updated 4 months ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year