Alternatives and similar repositories for scRNAseq_handson

Users that are interested in scRNAseq_handson are comparing it to the libraries listed below

• yyoshiaki / ikra
  RNAseq pipeline centered on Salmon
  ☆29Updated 11 months ago
• yuifu / ajacs68
  Materials for tutorial at ajacs68 (Japanese)
  ☆33Updated 7 years ago
• go-gts / gts
  GTS: Genome Transformation Subprograms
  ☆15Updated 2 years ago
• Kan-E / RNAseqChef
  Web app for automated, systematic, and integrated RNA-seq differential expression analysis
  ☆15Updated last week
• carushi / ParasoR
  Parallel solution for local RNA secondary structure analysis
  ☆11Updated 2 years ago
• misshie / ngsdat2
  NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)
  ☆43Updated 4 years ago
• SBRG / pymodulon
  Python package for analyzing and visualizing iModulons
  ☆13Updated this week
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated last month
• satoken / centroid-rna-package
  Centroid RNA package
  ☆19Updated 5 years ago
• everest-castaneda / knext
  Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…
  ☆11Updated last year
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆26Updated 11 months ago
• kztakemoto / network-analysis-in-biology
  「生物ネットワーク解析」の補足資料
  ☆25Updated 8 months ago
• sysbio-curie / Neko
  This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.
  ☆16Updated last month
• Pharmaco-OmicsLab / EasyPubPlot
  Shiny app to easily create publishable plots for scientific papers
  ☆39Updated 3 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated last month
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆42Updated 3 weeks ago
• genome-sci / python_bioinfo_2022
  ☆14Updated 2 years ago
• ylaboratory / gene-embedding-benchmarks
  Benchmarking gene embeddings on single, paired, and gene set tasks
  ☆17Updated this week
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆46Updated last week
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆20Updated 3 years ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• ThierryMondeel / Systems_Biology_FBA_tutorial
  Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam
  ☆14Updated 6 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆53Updated 6 years ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆31Updated 7 years ago
• ecnuzdd / PhosMap
  A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data
  ☆13Updated 2 years ago
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆30Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 4 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆76Updated 3 months ago
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆40Updated 4 months ago