kensung-lab / SurVirusLinks
☆17Updated 3 years ago
Alternatives and similar repositories for SurVirus
Users that are interested in SurVirus are comparing it to the libraries listed below
Sorting:
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 9 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- A bioinformatics tool for SV detection and virus integration discovery☆20Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 3 years ago
- a set of NGS pipelines☆24Updated last week
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆31Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 10 months ago
- ☆24Updated 10 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 8 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Define regions in the genome☆30Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year