☆18Jun 23, 2021Updated 4 years ago
Alternatives and similar repositories for SurVirus
Users that are interested in SurVirus are comparing it to the libraries listed below
Sorting:
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 2 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- HIVID2 is a tool for detecting virus integration events in the host genome.☆12Oct 1, 2023Updated 2 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 2 years ago
- Detect viral infection and integration sites on NGS input. Manuscript is in preparation.☆10Jan 20, 2026Updated last month
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago
- Exome Copy Number Variation Polisher via Deep Learning☆18Jun 1, 2020Updated 5 years ago
- Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.☆21Jan 30, 2026Updated last month
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆36Sep 8, 2025Updated 5 months ago
- Characterization of Germline variants☆100Mar 15, 2022Updated 3 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Jun 29, 2021Updated 4 years ago
- Benchmarking of CNV calling tools☆18May 18, 2019Updated 6 years ago
- A set of command line tools based on R and JavaScript.☆18Apr 21, 2020Updated 5 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 3 years ago
- 采用开源论坛系统Flarum建设GATK中文社区,该论坛所有帖子将以markdown代码形式发帖,所有的markdown源代码都会同步存放在此github的organization的这个project下面。GATK中文社区地址是:https://www.gatk.com.…☆17Oct 21, 2017Updated 8 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- Clinical interpretation of somatic mutations in cancer☆50Feb 20, 2025Updated last year
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- ☆23Feb 27, 2026Updated last week
- Genomics datastructures using Apache Arrow☆20Nov 19, 2020Updated 5 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Mar 7, 2022Updated 3 years ago
- GSCALite: Gene set for cancer analysis☆23May 25, 2022Updated 3 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 8 years ago
- BIC@MSKCC Variants Pipeline☆23Mar 28, 2023Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Gene Fusion Visualiser☆51Jan 15, 2023Updated 3 years ago
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆28Nov 16, 2024Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- Tumor Mutational Burden☆65Feb 17, 2026Updated 2 weeks ago
- An r package for proteomics data Analysis, developed from DEP.☆35Mar 21, 2025Updated 11 months ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆203Jan 5, 2026Updated 2 months ago
- ☆10Jan 20, 2022Updated 4 years ago
- ☆14Mar 22, 2018Updated 7 years ago
- A guide to running MaxQuant in Linux☆35Feb 10, 2020Updated 6 years ago
- MSigDB gene sets for multiple organisms in a tidy data format☆84Jul 22, 2025Updated 7 months ago
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Mar 13, 2022Updated 3 years ago