ROBACON / mobspy
The Meta-Species Oriented Biosystem Syntax in Python (MobsPy) was invented to facilitate the design of complex Chemical Reaction Networks
☆21Updated last month
Related projects ⓘ
Alternatives and complementary repositories for mobspy
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Updated 2 years ago
- Temporal Pathway Synthesizer☆16Updated 4 months ago
- Single cell network synthesis toolkit☆23Updated 3 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Updated 2 years ago
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆37Updated 3 months ago
- Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology☆32Updated 2 months ago
- ☆24Updated 3 years ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆17Updated 3 weeks ago
- R package for obtaining TCR alpha-beta sequence pairs☆8Updated 7 years ago
- A Python toolbox for COPASI☆13Updated 5 months ago
- Proteins as words, genomes as documents.☆20Updated 4 years ago
- DYNamics Agnostic Network MOdels☆18Updated 6 years ago
- Whole-cell modeling tutorials☆16Updated 4 years ago
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆12Updated last week
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 5 months ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Updated 6 months ago
- Modeling Latent Flow Structure using Hodge Decomposition☆9Updated 5 years ago
- libRoadRunner: A high-performance SBML simulator☆39Updated 3 weeks ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- A simulation framework to analyze signal flows in complex networks☆13Updated last year
- Repository for storing code related to the paper by Zdrazil B., Richter L., Brown N., and Guha R. "Moving Targets: Monitoring Target Tren…☆9Updated 3 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Updated 3 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆10Updated 3 weeks ago
- Tools for munging genomic data☆21Updated 5 years ago
- ☆33Updated 3 years ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆26Updated last year
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Updated last year
- ☆15Updated last year
- Fast Inference of Networks from Directed Regulations☆21Updated 11 months ago
- Biological file format specimens for testing packages, and functions to assist in testing.☆13Updated 4 months ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 2 years ago