Alternatives and similar repositories for VIcaller

Users that are interested in VIcaller are comparing it to the libraries listed below

• Genomon-Project / GenomonSV
  structure detection program
  ☆18Updated last year
• visanuwan / cresil
  CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences
  ☆12Updated 5 months ago
• dariober / cnv_facets
  Somatic copy variant caller (CNV) for next generation sequencing
  ☆75Updated last year
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆23Updated 3 months ago
• SigProfilerSuite / SigProfilerPlotting
  SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…
  ☆52Updated this week
• getzlab / deTiN
  DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…
  ☆53Updated 3 years ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆32Updated 3 years ago
• qiukunlong / seeksv
  A bioinformatics tool for SV detection and virus integration discovery
  ☆21Updated 8 years ago
• mobidic / knotAnnotSV
  A simple script to create a customizable html file from an AnnotSV output.
  ☆19Updated last year
• zhouzilu / iCNV
  Integrated copy number variation detection toolset
  ☆26Updated 6 years ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆74Updated 4 years ago
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆30Updated 4 years ago
• mskilab-org / JaBbA
  MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
  ☆59Updated 10 months ago
• kensung-lab / SurVirus
  ☆18Updated 4 years ago
• crimBubble / ECCsplorer
  The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…
  ☆20Updated last year
• KolmogorovLab / minda
  ☆27Updated 9 months ago
• SigProfilerSuite / SigProfilerSimulator
  SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…
  ☆21Updated last month
• kkrizanovic / RNAseqEval
  A tool for evaluating RNA seq mapping
  ☆22Updated 6 years ago
• sara-javadzadeh / FastViFi
  Detect viral infection and integration sites on NGS input. Manuscript is in preparation.
  ☆10Updated 3 weeks ago
• ndbrown6 / MSK-GRAIL-TECHVAL
  High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
  ☆22Updated 5 years ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 4 years ago
• uci-cbcl / PyLOH
  Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity
  ☆40Updated 8 years ago
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆54Updated last year
• s-andrews / SeqMonk
  SeqMonk NGS visualisation and analysis tool
  ☆51Updated 3 months ago
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 4 years ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• ding-lab / MuSiC2
  identifying mutational significance in cancer genomes
  ☆62Updated 3 years ago
• caballero / SeqComplex
  Algorithms to compute DNA complexity
  ☆35Updated 3 years ago
• dpryan79 / SE-MEI
  Tools for finding mobile element insertions from single-end datasets
  ☆24Updated 6 years ago