xunchen85 / VIcallerLinks
A software to detect virome-wide integrations
☆14Updated 4 years ago
Alternatives and similar repositories for VIcaller
Users that are interested in VIcaller are comparing it to the libraries listed below
Sorting:
- structure detection program☆18Updated last year
- Detect viral infection and integration sites on NGS input. Manuscript is in preparation.☆10Updated 10 months ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆51Updated last month
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Updated last year
- RNA Fusion Detection and Quantification☆18Updated 7 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆26Updated 4 years ago
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Updated 3 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- ☆18Updated 4 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Updated 8 years ago
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Updated 4 years ago
- Integrated copy number variation detection toolset☆26Updated 5 years ago
- SeqMonk NGS visualisation and analysis tool☆50Updated last month
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated 6 months ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 3 years ago
- Epigenetic Smoking status Estimator☆11Updated 5 years ago
- Python module and utility programs for working with GFF files☆33Updated 5 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- R package designed to simplify structural variant analysis☆74Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago