Alternatives and similar repositories for R-for-Plant-Breeding

Users that are interested in R-for-Plant-Breeding are comparing it to the libraries listed below

• melindacmills / IntroStatisticalGenetics
  GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis
  ☆30Updated 5 years ago
• junjunlab / transPlotR
  An elegant package to visualize gene structures
  ☆83Updated 2 years ago
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆51Updated 6 years ago
• Lindsey-LCFoong / WGCNA_tutorial
  A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
  ☆72Updated 3 years ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆76Updated 8 months ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆86Updated 3 years ago
• hamidghaedi / Methylation_Analysis
  Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis
  ☆29Updated last year
• Asa12138 / MetaNet
  Network analysis for multi-omics
  ☆96Updated last month
• BioSenior / ggVolcano
  The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …
  ☆93Updated 2 years ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆59Updated 11 months ago
• hbctraining / DGE_workshop_salmon
  ☆73Updated 3 years ago
• xryanglab / RiboCode
  release version
  ☆57Updated 3 years ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆175Updated last year
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• cxli233 / SimpleTidy_GeneCoEx
  A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
  ☆212Updated 4 months ago
• Jiawang1209 / ggNetView
  ggNetView is an R package for network analysis and visualization. It provides flexible and publication-ready tools for exploring complex …
  ☆87Updated this week
• amarinderthind / RNA-seq-tutorial-for-gene-differential-expression-analysis
  This RNAseq data analysis tutorial is created for educational purpose
  ☆34Updated 3 months ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆33Updated last year
• NBISweden / workshop-ngsintro
  Workshop • Intro to Bioinformatics using NGS data • 5 days
  ☆16Updated last month
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆91Updated 3 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆30Updated 7 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago
• ShawnWx2019 / WGCNA-shinyApp
  shiny app for WGCNA...
  ☆32Updated last year
• crazyhottommy / DNA-methylation-analysis
  DNA methylation analysis notes from Ming Tang
  ☆92Updated 6 years ago
• Asa12138 / ReporterScore
  Generalized Reporter Score-based Functional Enrichment Method for Omics Data
  ☆85Updated 6 months ago
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆88Updated 5 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆118Updated 6 months ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆63Updated last year
• PMBio / peer
  A factor analysis package
  ☆104Updated 13 years ago
• sjdlabgroup / SAHMI
  ☆88Updated last year