R for Plant Breeding is open source resource to lear the Plant Breeding and Genetics related data analysis and visualizations
☆49Aug 29, 2025Updated 9 months ago
Alternatives and similar repositories for R-for-Plant-Breeding
Users that are interested in R-for-Plant-Breeding are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆37Feb 5, 2022Updated 4 years ago
- Code for "Using machine learning to combine genetic and environmental data for maize grain yield predictions across multi-environment tri…☆20Jul 23, 2024Updated last year
- A R package for Participatory Plant Breeding statisticial analyses☆10Apr 30, 2021Updated 5 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆55Jan 21, 2026Updated 4 months ago
- ☆28Sep 20, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Separating the direct effects of risk factors for atherosclerotic cardiovascular disease from those mediated by type 2 diabetes☆17Mar 12, 2023Updated 3 years ago
- Course notes and scripts from ASReml-R short course taught by Salvador Gezan at the USDA-ARS station in Miami, FL☆13Jun 22, 2016Updated 9 years ago
- Modular Breeding Program Simulator☆46Feb 19, 2026Updated 3 months ago
- Draw genetic map (linkage map) in R☆14Nov 12, 2017Updated 8 years ago
- easyPheno: a model agnostic phenotype prediction framework☆15Nov 24, 2025Updated 6 months ago
- Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]☆19Aug 6, 2023Updated 2 years ago
- ☆29Nov 22, 2020Updated 5 years ago
- ☆18Mar 17, 2022Updated 4 years ago
- asremlPlus is an R package that augments the use of 'ASReml-R' and 'ASReml4-R' in fitting mixed models☆21May 19, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mendelian Randomization Bayesian Model Averaging☆23Feb 21, 2023Updated 3 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- ☆12Apr 10, 2021Updated 5 years ago
- A comprehensive platform for population-scale genomic analyses☆10Apr 20, 2026Updated last month
- Code for the spatial transcriptomic paper on IPF lungs☆23Jul 18, 2024Updated last year
- High dimensional propensity score algorithm in R☆31Aug 17, 2017Updated 8 years ago
- https://filippob.github.io/introduction_to_gwas/☆22Jun 8, 2026Updated last week
- An R package for conducting co-localization analysis. Edit☆26Jan 4, 2020Updated 6 years ago
- R package for breeding program simulations☆68May 8, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Heritability in plant breeding - R and SAS code examples☆40Feb 27, 2021Updated 5 years ago
- Using genome-wide markers for polyploid breeding☆12May 2, 2026Updated last month
- ☆19Jan 15, 2026Updated 5 months ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆35Nov 14, 2024Updated last year
- A tool to visualize the haplotype pattern and various information in excel.☆24Mar 5, 2025Updated last year
- blupADC:An useful tool for animal and plant breeding☆32Nov 22, 2024Updated last year
- Implementation of joint bayesian model, written in python.☆11Aug 2, 2021Updated 4 years ago
- A serious game to teach plant selective breeding.☆12Mar 23, 2026Updated 2 months ago
- 庄闪闪的可视化笔记☆17Mar 24, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Design gene specific KASP and CAPS/dCAPS primers for any species☆18Sep 19, 2022Updated 3 years ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Dec 11, 2023Updated 2 years ago
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆73Jun 7, 2026Updated last week
- ☆22Sep 22, 2022Updated 3 years ago
- 公众号[庄闪闪的成长手册]对应的R资料（代码+数据）☆156Apr 14, 2024Updated 2 years ago
- Full GATK SNP calling pipeline☆24Oct 30, 2025Updated 7 months ago