Alternatives and similar repositories for R-for-Plant-Breeding

Users that are interested in R-for-Plant-Breeding are comparing it to the libraries listed below

• melindacmills / IntroStatisticalGenetics
  GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis
  ☆28Updated 5 years ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆37Updated last week
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆72Updated last month
• junjunlab / transPlotR
  An elegant package to visualize gene structures
  ☆77Updated 2 years ago
• alexa-kur / miQTL_cookbook
  ☆45Updated 5 years ago
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆115Updated 2 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆65Updated 2 years ago
• AAlhendi1707 / GWAS
  Genome-wide Association Study (GWAS) Tutorial
  ☆40Updated 6 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆40Updated 2 years ago
• Asa12138 / MetaNet
  Network analysis for multi-omics
  ☆54Updated this week
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆49Updated last month
• cxli233 / SimpleTidy_GeneCoEx
  A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
  ☆202Updated 10 months ago
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆51Updated 5 years ago
• sib-swiss / first-steps-with-R-training
  repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
  ☆47Updated 4 months ago
• neurogenetics / GWAS-pipeline
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…
  ☆42Updated 3 years ago
• Lindseynicer / WGCNA_tutorial
  A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
  ☆66Updated 3 years ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆44Updated this week
• raynamharris / Shell_Intro_for_Bioinformatics_STG
  Intro to Shell for Bioinformatics - with STG examples
  ☆28Updated 8 years ago
• stormlovetao / eQTLQC
  ☆26Updated 4 years ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆156Updated 9 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• junjunlab / ggcirclize
  Creating Circular Graph with the Grammar of GGplot2
  ☆19Updated last year
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 3 years ago
• crazyhottommy / DNA-methylation-analysis
  DNA methylation analysis notes from Ming Tang
  ☆87Updated 5 years ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆162Updated 7 months ago
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆77Updated last year
• amarinderthind / RNA-seq-tutorial-for-gene-differential-expression-analysis
  This RNAseq data analysis tutorial is created for educational purpose
  ☆33Updated 3 months ago