Alternatives and similar repositories for WGCNA

Users that are interested in WGCNA are comparing it to the libraries listed below

• segrelabgenomics / TwoSampleMR_pipeline
  Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.
  ☆26Updated last year
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆73Updated 3 months ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 6 years ago
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆51Updated 5 years ago
• Xinglab / Myc-regulated_AS_PrCa_paper
  Scripts for plotting figures and running analysis throughout the manuscript
  ☆11Updated 3 years ago
• flystar233 / pyscript-bio
  生物信息学python代码，专注于重测序文本计算、处理
  ☆26Updated 2 months ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated this week
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆64Updated 10 months ago
• zhaoshuoxp / Pipelines-Wrappers
  Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.
  ☆14Updated 2 months ago
• OmicsAcademy / bioinf2019
  ☆29Updated 6 years ago
• tjbencomo / ngs-pipeline
  Pipeline for Somatic Variant Calling with WES and WGS data
  ☆23Updated last year
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆61Updated 2 years ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• Changwuuu / Cuproptosis-pancancer
  ☆18Updated last year
• hakyimlab / PredictDBPipeline
  ☆15Updated 4 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆57Updated 7 months ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 10 months ago
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• bioinfo-biols / CIRIquant
  circular RNA quantification tools
  ☆31Updated last year
• shijianasdf / UsualRcode
  bioinformatics R test code
  ☆14Updated last month
• menghaowei / ngstools
  My own tools code for NGS data analysis (Next Generation Sequencing)
  ☆30Updated 5 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago
• melindacmills / IntroStatisticalGenetics
  GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis
  ☆29Updated 5 years ago
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆54Updated last year
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆24Updated last year
• lulab / shared_scripts
  shared scripts in Lu Lab @ Tsinghua University
  ☆13Updated 6 years ago
• Candlelight-XYJ / Bioinformatics-Project
  生物信息学项目实践仓库🏆🥇
  ☆51Updated 5 years ago
• rli012 / GDCRNATools
  GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC
  ☆66Updated last year
• best-practices-in-bioinformatics / basic
  ☆38Updated 7 years ago