Alternatives and similar repositories for WGCNA

Users that are interested in WGCNA are comparing it to the libraries listed below

• segrelabgenomics / TwoSampleMR_pipeline
  Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.
  ☆26Updated last year
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆72Updated last month
• Changwuuu / Cuproptosis-pancancer
  ☆18Updated last year
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆31Updated 9 months ago
• Lindseynicer / WGCNA_tutorial
  A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
  ☆66Updated 3 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• Asa12138 / MetaNet
  Network analysis for multi-omics
  ☆40Updated last month
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• jokergoo / ComplexHeatmap_v2_paper_code
  ☆20Updated 2 years ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆15Updated 9 months ago
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆44Updated 4 years ago
• YuLab-SMU / fanyi
  Translate Words or Sentences via Online Translators
  ☆52Updated last week
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆60Updated 2 years ago
• Tong-Chen / Bioinfo_course_R
  ☆39Updated last year
• junjunlab / RiboProfiler
  Integrating Ribo-SEQ Upstream and Downstream Analysis
  ☆11Updated 7 months ago
• BioSenior / ggVolcano
  The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …
  ☆84Updated 2 years ago
• fswfsw / ScRNA-smartseq2
  单细胞转录组实战
  ☆14Updated 5 years ago
• Xinglab / Myc-regulated_AS_PrCa_paper
  Scripts for plotting figures and running analysis throughout the manuscript
  ☆11Updated 3 years ago
• yuanlizhanshi / NGS_Workflow
  Some NGS workflow created by snakemake
  ☆13Updated 4 months ago
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆51Updated 5 years ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 6 years ago
• BleekerLab / snakemake_rnaseq
  A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential anal…
  ☆14Updated 2 years ago
• PSSUN / CircCode
  A Python3-base pipeline for translated circular RNA(circRNA) identification
  ☆16Updated 2 years ago
• RitchieLab / Gene-level-statistical-colocalization
  ☆15Updated 4 years ago
• guomics-lab / CVDSBA
  The project data analysis code
  ☆19Updated 9 months ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 8 months ago
• GerkeLab / TCGAhrd
  Homologous recombination deficiency in TCGA PanCancer Atlas
  ☆27Updated 4 years ago
• nf-core / circrna
  circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
  ☆54Updated 2 weeks ago