grimmlab / easyPhenoLinks
easyPheno: a model agnostic phenotype prediction framework
☆13Updated 2 years ago
Alternatives and similar repositories for easyPheno
Users that are interested in easyPheno are comparing it to the libraries listed below
Sorting:
- Modular Breeding Program Simulator☆43Updated 2 months ago
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆43Updated 4 months ago
- Cross-species modeling of plant genomes☆50Updated 3 weeks ago
- R package for breeding program simulations☆56Updated 2 weeks ago
- The Ross-Ibarra's lab documentation☆26Updated 3 years ago
- ☆12Updated last year
- Code for "Using machine learning to combine genetic and environmental data for maize grain yield predictions across multi-environment tri…☆17Updated last year
- R package for fitting high-dimensional multivariate linear mixed effect models☆38Updated 4 months ago
- genotype dimensionality reduction with a VAE☆46Updated 7 months ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆82Updated last month
- cDNA read preprocessing☆78Updated last year
- ☆26Updated 4 years ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Updated 9 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆112Updated last month
- Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning☆70Updated 2 years ago
- SEER, reimplemented in python 🐍🔮☆124Updated 4 months ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆85Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆188Updated 3 months ago
- ☆75Updated 4 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆156Updated last year
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆246Updated this week
- Genome Association Predict Integrate Tools☆210Updated last week
- ☆90Updated 3 years ago
- VCF-kit: Assorted utilities for the variant call format☆130Updated 3 months ago
- A declarative interactive genomics visualization library for Python.☆229Updated last month
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆106Updated 3 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆122Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆210Updated 3 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 8 months ago
- Tools and utilities for running Dockerized metagenomics tools in the Cloud☆22Updated 6 years ago