Alternatives and similar repositories for TreeScaper:

Users that are interested in TreeScaper are comparing it to the libraries listed below

• FePhyFoFum / PyPHLAWD
  Python version of PHLAWD
  ☆21Updated 5 months ago
• duchene / phylomad
  ☆19Updated 9 months ago
• marekborowiec / spruceup
  spruceup
  ☆24Updated 7 months ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆15Updated 3 years ago
• chaoszhang / TAPER
  Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…
  ☆12Updated 10 months ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆40Updated 6 months ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated last year
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆31Updated 2 years ago
• clockor2 / clockor2
  Inferring global and local strict molecular clocks using root-to-tip regression
  ☆12Updated 8 months ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated last year
• arzwa / Whale.jl
  Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
  ☆15Updated 2 years ago
• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 5 years ago
• TBooker / PicMin
  ☆11Updated last year
• danlwarren / RWTY
  R We There Yet?
  ☆30Updated 2 weeks ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆18Updated 3 years ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆18Updated 4 years ago
• blackrim / phyutility
  ☆22Updated 11 years ago
• BenoitMorel / Asteroid
  ☆12Updated last year
• mongiardino / chronospace
  que paquete
  ☆9Updated 8 months ago
• bcbc-group / Botany2020NMGWorkshop
  A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop
  ☆15Updated 4 years ago
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 3 years ago
• computations / root_digger
  A tool to root phylogenies
  ☆19Updated 7 months ago
• nmatzke / BEASTmasteR
  R code for writing Beast2 XML (especially morphology/tip-dating)
  ☆11Updated 9 months ago
• agmcfarland / GeneGrouper
  CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
  ☆17Updated 5 months ago
• tothuhien / Rlsd2
  An R-wrapper for lsd2
  ☆9Updated last year
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆17Updated 2 years ago
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆32Updated 2 months ago
• mpdunne / orthofiller
  OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
  ☆22Updated 2 years ago
• reslp / phylociraptor
  rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
  ☆25Updated 2 months ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆21Updated 7 years ago