Gene Expression Prediction from Histology Images via Hypergraph Neural Networks
☆18May 19, 2025Updated last year
Alternatives and similar repositories for HGGEP
Users that are interested in HGGEP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell Spatial Transcriptomics Imputation via Style Transfer☆22Jun 3, 2026Updated 2 months ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆88Oct 22, 2024Updated last year
- ☆33Jul 18, 2025Updated last year
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆54Apr 15, 2025Updated last year
- PyTorch implementation of HisToGene☆58Nov 30, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Anatomy-aware Spatial Imputation Graphic Network for 3D Spatial Transcriptomics☆24Jun 28, 2025Updated last year
- ☆52May 19, 2025Updated last year
- [AAAI 2025] M2OST: Many-to-one Regression for Predicting Spatial Transcriptomics from Digital Pathology Images☆14Dec 1, 2025Updated 8 months ago
- ☆30Mar 15, 2024Updated 2 years ago
- Her2 Breast Cancer Project☆105Nov 27, 2022Updated 3 years ago
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆36Aug 11, 2025Updated 11 months ago
- ☆16Oct 1, 2023Updated 2 years ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆50Oct 22, 2025Updated 9 months ago
- [Nature Biomedical Engineering]This is the official code repo for the paper: spEMO: Exploring the Capacity of Foundation Models for Analy…☆22May 9, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13May 28, 2025Updated last year
- A large scale benchmark for cross-modal learning of histology and spatial expressions☆24Oct 28, 2025Updated 9 months ago
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆52Jul 27, 2025Updated last year
- ☆15Apr 11, 2026Updated 3 months ago
- Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)☆36Nov 24, 2025Updated 8 months ago
- Cell localization and counting: 1) Exponential Distance Transform Maps for Cell Localization; 2) Multi-scale Hypergraph-based Feature Ali…☆24Apr 10, 2024Updated 2 years ago
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Jun 2, 2026Updated 2 months ago
- ☆29Apr 29, 2026Updated 3 months ago
- A python (PyTorch) implementation of Shadow-consistent Semi-supervised Learning (SCO-SSL) method for prostate ultrasound segmentation☆20Nov 5, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆22Feb 5, 2025Updated last year
- ☆20Oct 28, 2025Updated 9 months ago
- CellVerse: Do Large Language Models Really Understand Cell Biology?☆16May 14, 2025Updated last year
- Whole Slide Images papers in CVPR-2025☆59Mar 9, 2025Updated last year
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 8 months ago
- Deep learning on histopathology images.☆148Sep 8, 2021Updated 4 years ago
- Spatial Expression-Aligned Learning to improve pathology foundation models☆48Feb 17, 2026Updated 5 months ago
- [CVPR 2025] Official Repo of Paper "FOCUS: Knowledge-enhanced Adaptive Visual Compression for Few-shot Whole Slide Image Classification"☆52Jun 6, 2025Updated last year
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆42Jan 10, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Knowledge graph enhanced LLM for binding affinity prediction☆14Aug 20, 2024Updated last year
- Lightweight induced fit docking☆22May 22, 2023Updated 3 years ago
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- PDD: Awesome Phenotypic Drug Discovery☆41Oct 17, 2025Updated 9 months ago
- ☆32Jun 18, 2025Updated last year
- The implementations for NeurIPS 2024 paper "Leveraging Tumor Heterogeneity: Heterogeneous Graph Representation Learning for Cancer Surviv…☆15Jun 11, 2025Updated last year
- Code for the THItoGene☆30Apr 9, 2025Updated last year