STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images
☆44Jul 27, 2025Updated 9 months ago
Alternatives and similar repositories for STPath
Users that are interested in STPath are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆31Aug 11, 2025Updated 8 months ago
- ☆87May 13, 2025Updated 11 months ago
- ☆50May 19, 2025Updated 11 months ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆48Apr 15, 2025Updated last year
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆395Apr 16, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".☆47Sep 2, 2025Updated 7 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆26Mar 13, 2024Updated 2 years ago
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆137Jun 3, 2025Updated 10 months ago
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆12May 10, 2025Updated 11 months ago
- Weakly-Supervised Residual Evidential Learning for Multi-Instance Uncertainty Estimation (ICML 2024)☆15Jul 19, 2024Updated last year
- ☆26Mar 22, 2026Updated last month
- ☆26Jul 16, 2024Updated last year
- Whole Slide Images Segmentation using Patch UNet☆17Mar 30, 2020Updated 6 years ago
- ☆38Oct 26, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ViDRiP-LLaVA: A Dataset and Benchmark for Diagnostic Reasoning from Pathology Videos☆23May 21, 2025Updated 11 months ago
- ☆32Jun 9, 2025Updated 10 months ago
- Pseudo-Bag Mixup Augmentation for Multiple Instance Learning-Based Whole Slide Image Classification (IEEE TMI 2024)☆68Mar 17, 2025Updated last year
- ☆34Jan 29, 2025Updated last year
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 9 months ago
- A repository of case studies using ProjecTILs☆15Jul 26, 2024Updated last year
- Deep Clustering Learning☆12Aug 8, 2019Updated 6 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- Official implementation for "Cluster-wise Graph Transformer with Dual-granularity Kernelized Attention" (NeurIPS2024 Spotlight)☆17Oct 10, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆15Dec 8, 2024Updated last year
- ☆13May 28, 2025Updated 11 months ago
- This repository contains a curated list of papers, code, and other resources related to the automatic colorization of images using deep l…☆18Jul 20, 2023Updated 2 years ago
- ☆27Mar 30, 2026Updated 3 weeks ago
- A curated list of awesome Multi-instance Learning frameworks for Whole Slide Images (WSIs) classification, segmentation, etc.☆19Aug 5, 2024Updated last year
- A tutorial on learned non-adversarial invariance in neural networks☆14Dec 8, 2019Updated 6 years ago
- Standardized benchmark for computational pathology foundation models.☆139Nov 7, 2025Updated 5 months ago
- Deep learning on histopathology images.☆145Sep 8, 2021Updated 4 years ago
- List of pathology feature extractors and foundation models☆187Feb 15, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- 🔬 Code-free deep segmentation for computational pathology☆56Jun 14, 2024Updated last year
- ☆14Aug 26, 2020Updated 5 years ago
- Here is the official implementation of the paper "Cross-Modal Translation and Alignment for Survival Analysis"☆64Apr 21, 2024Updated 2 years ago
- Iteratively Coupled Multiple Instance Learning☆23Nov 28, 2024Updated last year
- Awesome papers & datasets specifically focused on pathology.☆61Mar 20, 2026Updated last month
- [CVPR 2024] Feature Re-Embedding: Towards Foundation Model-Level Performance in Computational Pathology☆135Sep 19, 2025Updated 7 months ago