Graph-and-Geometric-Learning / STPathLinks
STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images
☆23Updated 3 months ago
Alternatives and similar repositories for STPath
Users that are interested in STPath are comparing it to the libraries listed below
Sorting:
- Her2 Breast Cancer Project☆87Updated 2 years ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆331Updated 2 months ago
- ☆45Updated 7 months ago
- ☆107Updated 5 months ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆80Updated last year
- ☆50Updated 3 years ago
- PyTorch implementation of HisToGene☆42Updated 3 years ago
- ☆23Updated 7 months ago
- ☆75Updated 6 months ago
- Code for the THItoGene☆24Updated 7 months ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆38Updated 7 months ago
- Deep learning on histopathology images.☆133Updated 4 years ago
- ☆147Updated 10 months ago
- ☆53Updated 2 months ago
- ☆17Updated 4 months ago
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆20Updated 3 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆115Updated 7 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆22Updated last year
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆62Updated last year
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆18Updated last year
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆109Updated last year
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆40Updated 10 months ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆243Updated 2 years ago
- Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".☆31Updated 2 months ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Updated last year
- Python package implementing our method MatchCLOT for multimodal single-cell data integration☆13Updated 2 years ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆228Updated 2 years ago
- ☆44Updated 5 months ago
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆19Updated last year