Alternatives and similar repositories for STPath

Users that are interested in STPath are comparing it to the libraries listed below

• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆92Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆95Updated 5 months ago
• almaan / her2st
  Her2 Breast Cancer Project
  ☆84Updated 2 years ago
• wehos / CellT
  An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
  ☆18Updated 2 years ago
• SichenZhu / Stem
  [ICLR 2025] Stem: Gene Expression Inference from Histology Images
  ☆37Updated 4 months ago
• daviddaiweizhang / istar
  ☆141Updated 8 months ago
• jianhuupenn / SpaGCN
  SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…
  ☆233Updated last year
• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆81Updated 10 months ago
• JinmiaoChenLab / SEDR_analyses
  ☆39Updated last year
• mahmoodlab / HEST
  Integrating histology and spatial transcriptomics - NeurIPS 2024
  ☆303Updated this week
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆216Updated 6 months ago
• JiangBioLab / DeepST
  Identify spatial domain
  ☆79Updated 3 months ago
• JinmiaoChenLab / SEDR
  ☆60Updated 9 months ago
• ys-zong / conST
  conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
  ☆28Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆68Updated 6 months ago
• TencentAILabHealthcare / MLA-GNN
  ☆43Updated 8 months ago
• jsxlei / scCLIP
  ☆30Updated last year
• kpcoleman / miso
  ☆27Updated 7 months ago
• GuangyuWangLab2021 / Loki
  ☆95Updated 3 months ago
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆33Updated 2 years ago
• bunnelab / virtues
  A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…
  ☆33Updated 6 months ago
• fdu-wangfeilab / stDiff
  A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
  ☆22Updated last year
• JinmiaoChenLab / GraphST
  ☆127Updated last year
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆28Updated last year
• biomed-AI / Hist2ST
  ☆46Updated 3 years ago
• AI4SCR / MatchCLOT
  Python package implementing our method MatchCLOT for multimodal single-cell data integration
  ☆13Updated 2 years ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆62Updated 8 months ago
• ratschlab / HistoPlexer
  ☆19Updated 5 months ago
• bowang-lab / scGPT-spatial
  ☆108Updated 6 months ago
• yrjia1015 / THItoGene
  Code for the THItoGene
  ☆24Updated 4 months ago