☆19Oct 28, 2025Updated 8 months ago
Alternatives and similar repositories for STimage
Users that are interested in STimage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)☆35Nov 24, 2025Updated 7 months ago
- ☆28Apr 29, 2026Updated 2 months ago
- 肿瘤相关的数据集，包括但不限于影像、病理、细胞学、预后、多组学病理数据 【Oncology-related datasets, including but not limited to medical imaging, pathology, cytology, progno…☆15Jan 27, 2026Updated 5 months ago
- A large scale benchmark for cross-modal learning of histology and spatial expressions☆24Oct 28, 2025Updated 8 months ago
- ☆13May 28, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆13May 12, 2026Updated 2 months ago
- DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and sin…☆88Jul 6, 2026Updated 2 weeks ago
- Implementation of Seurat's SpatialFeaturePlot to allow blended expression☆11Feb 28, 2025Updated last year
- ☆12May 24, 2024Updated 2 years ago
- ☆16Nov 3, 2025Updated 8 months ago
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆42Jan 10, 2025Updated last year
- Spatial Expression-Aligned Learning to improve pathology foundation models☆48Feb 17, 2026Updated 5 months ago
- Spatially-aware quality control for spatial transcriptomics☆16Oct 22, 2025Updated 8 months ago
- Fine-grained Spatial Transcriptomics by integrating paired histology image☆25Mar 30, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Gene Expression Prediction from Histology Images via Hypergraph Neural Networks☆18May 19, 2025Updated last year
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Jun 2, 2026Updated last month
- ☆10Apr 22, 2024Updated 2 years ago
- The official repo of "A Multimodal Knowledge-enhanced Whole-slide Pathology Foundation Model"☆53May 1, 2026Updated 2 months ago
- LiverCancerAssistant☆10Mar 24, 2020Updated 6 years ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 2 years ago
- ☆71Feb 11, 2026Updated 5 months ago
- This repository contains data and other materials related to the DeepPT manuscript☆17Mar 12, 2024Updated 2 years ago
- xMIL: Insightful Explanations for Multiple Instance Learning in Histopathology☆38Apr 27, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆38Mar 30, 2026Updated 3 months ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆422Apr 16, 2026Updated 3 months ago
- ☆73Sep 16, 2025Updated 10 months ago
- [MICCAI 2024]Official implementation of "Pathological Semantics-Preserving Learning for H&E-to-IHC Virtual Staining"☆42Apr 22, 2026Updated 2 months ago
- ☆98Aug 10, 2025Updated 11 months ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆146Jun 3, 2025Updated last year
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆50May 8, 2025Updated last year
- [NeurIPS-2023] The PyTorch Implementation of MoSo. The algorithms are based on our paper: "Data Pruning via Moving-one-Sample-out". MoSo …☆10May 21, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Jan 21, 2023Updated 3 years ago
- Repository of the paper: "Histo-Miner: Tissue Features Extraction With Deep Learning from H&E Images of Squamous Cell Carcinoma Skin Canc…☆19Mar 21, 2026Updated 4 months ago
- ☆45Feb 23, 2025Updated last year
- Transformer-based deep learning for spatial transcriptomics enhancement.☆12Mar 15, 2024Updated 2 years ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Apr 8, 2025Updated last year
- ☆18Jan 28, 2024Updated 2 years ago
- A Framework for Black-box Vector Optimization☆31Mar 16, 2026Updated 4 months ago