The most comprehensive database designed for the analysis and visualization of single cell perturbation data
☆11Feb 6, 2025Updated last year
Alternatives and similar repositories for PerturBase
Users that are interested in PerturBase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20May 23, 2025Updated last year
- ☆12Oct 28, 2025Updated last year
- ☆15Oct 15, 2026Updated 3 weeks ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- Gene perturbation prediction using LLM embeddings☆17Sep 16, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Transcriptional Inference using Gene Expression and Regulatory data☆10May 30, 2024Updated 2 years ago
- ☆12May 14, 2025Updated last year
- ☆12May 21, 2025Updated last year
- Modeling complex perturbations with CellFlow☆11Jul 17, 2026Updated 3 months ago
- SCREE (Single-cell CRISPR screen data analysEs and perturbation modEling) is a workflow to perform quality control and analyses of multim…☆11Oct 13, 2022Updated 4 years ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 10 months ago
- Single-cell perturbation effects prediction benchmark☆110Oct 22, 2026Updated 3 weeks ago
- Toolbox for non-linear calibration modeling.☆32Jul 21, 2026Updated 3 months ago
- ☆29Oct 4, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Aug 14, 2020Updated 6 years ago
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 3 years ago
- SMR-IVW extension of the SMR software☆10Mar 17, 2023Updated 3 years ago
- ☆12May 11, 2016Updated 10 years ago
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆24Oct 29, 2024Updated 2 years ago
- Source Code for the scIBD manuscript☆10May 4, 2023Updated 3 years ago
- Clonality inference in multiple tumor samples using phylogeny☆14Sep 12, 2017Updated 9 years ago
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆19Jul 14, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- R package for Protein activity analysis of single-cell RNAseq.☆90Sep 26, 2026Updated last month
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆23May 1, 2024Updated 2 years ago
- Knowledge-primed neural networks☆39Mar 24, 2023Updated 3 years ago
- ☆15Dec 8, 2023Updated 2 years ago
- Python bindings for SingleR☆16Aug 14, 2026Updated 2 months ago
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆30Mar 20, 2026Updated 7 months ago
- ☆12Aug 3, 2026Updated 3 months ago
- The Singularity Community Catalog of Singularity* recipe files.☆11Oct 27, 2025Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆19Oct 10, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆23Oct 10, 2024Updated 2 years ago
- An instructional/experiential book using R and Bioconductor.☆11Sep 19, 2026Updated last month
- ☆19Feb 20, 2018Updated 8 years ago
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆17Nov 27, 2023Updated 2 years ago
- ☆31Oct 14, 2024Updated 2 years ago
- ☆10Mar 12, 2023Updated 3 years ago
- A web app to compare single-cell annotations☆10Feb 17, 2025Updated last year
Are these results useful?