Alternatives and similar repositories for mass-suite

Users that are interested in mass-suite are comparing it to the libraries listed below

• matchms / ms2deepscore
  Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
  ☆61Updated last week
• HuanLab / BUDDY
  Bottom-up MS/MS interrogation & Experiment-specific global annotation
  ☆28Updated 6 months ago
• pnnl / deimos
  ☆34Updated 3 weeks ago
• biosustain / pyOpenMS_UmetaFlow
  Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)
  ☆21Updated 7 months ago
• griquelme / tidyms
  TidyMS: Tools for working with MS data in untargeted metabolomics
  ☆55Updated 11 months ago
• Philipbear / msbuddy
  a python package for molecular formula analysis in MS-based small molecule studies
  ☆27Updated 4 months ago
• michaelwitting / RepoRT
  This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …
  ☆49Updated 3 months ago
• merlin-ms / awesome-mass-spectral-libraries
  ☆19Updated last year
• JamesJeffryes / pyclassyfire
  A python client for the ClassyFire API
  ☆16Updated 5 years ago
• volvox292 / mass2smiles
  deep learning based prediction of structures and functional groups from MS/MS spectra
  ☆12Updated 4 months ago
• pnnl / MSAC
  ☆23Updated 3 months ago
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆45Updated last month
• HuanLab / ISFrag
  A bioinformatic tool facilitating automated in-source fragmentation identification
  ☆10Updated 2 years ago
• shuzhao-li-lab / PythonCentricPipelineForMetabolomics
  Python pipeline for metabolomics data preprocessing, QC, standardization and annotation
  ☆15Updated 6 months ago
• eMetaboHUB / FragHub
  ☆14Updated 2 weeks ago
• hcji / DeepMASS
  A known-to-unknown metabolite identification workflow
  ☆20Updated 4 years ago
• biorack / simile
  ☆16Updated 2 years ago
• BAMeScience / fiora
  Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…
  ☆35Updated this week
• zhanghailiangcsu / MSBERT
  Improve the accuracy of database search by using BERT to embed MS/MS reasonably
  ☆18Updated 8 months ago
• mobiusklein / brainpy
  A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations
  ☆21Updated last month
• mobiusklein / ms_peak_picker
  A small library to provide peak picking for software processing mass spectrometry data
  ☆23Updated 6 months ago
• lucinamay / biosynfoni
  a *biosynformatic* fingerprint to explore natural product distance and diversity
  ☆18Updated 2 months ago
• pnnl / darkchem
  ☆32Updated 6 months ago
• Philipbear / BUDDY_Metabolomics
  Molecular formula discovery via bottom-up MS/MS interrogation
  ☆13Updated 9 months ago
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated last year
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆38Updated this week
• elnurgar / mzxml-precursor-corrector
  ☆8Updated 11 months ago
• bittremieux-lab / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆29Updated last month
• Elizachem / SMRT_transfer
  ☆10Updated 3 years ago
• pyQms / pyqms
  pyQms, generalized, fast and accurate mass spectrometry data quantification
  ☆28Updated 11 months ago