urluzhi / scripts
Bioinformatics projects and code shared by Zhi John Lu
☆10Updated 3 years ago
Alternatives and similar repositories for scripts:
Users that are interested in scripts are comparing it to the libraries listed below
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆64Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated 3 weeks ago
- icSHAPE pipeline☆29Updated 9 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆74Updated 9 months ago
- Computational Optimization of DNA Activity (CODA)☆56Updated 3 weeks ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆80Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- A list of positions (mostly biology-related) open to apply☆35Updated this week
- Integrative Python library for RNA Secondary Structure Analysis☆16Updated last month
- ☆73Updated last year
- HLA-II ligand predictor.☆43Updated 2 years ago
- ☆47Updated 3 years ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆69Updated this week
- This is a repo that includes some resources about machine learning and the application in biology. We are students/alumni of Peking Unive…☆15Updated 5 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- Public repository for ShapeMapper 2 releases☆34Updated 4 months ago
- circular RNA analysis toolset☆81Updated 7 months ago
- HLA-I ligand predictor☆37Updated 4 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆31Updated last week
- ☆65Updated 2 months ago
- ☆33Updated last week
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated last year
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆110Updated 7 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆41Updated 2 years ago
- Code for 5UTR project☆24Updated last year
- Python interface to running command-line and web-based MHC binding predictors☆96Updated 6 months ago
- ☆27Updated 3 months ago
- ☆37Updated 2 years ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆82Updated last month
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆52Updated last year