urluzhi / scripts
Bioinformatics projects and code shared by Zhi John Lu
☆10Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for scripts
- ☆44Updated 2 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆61Updated 8 months ago
- icSHAPE pipeline☆29Updated 9 years ago
- Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi☆13Updated last year
- Python interface to running command-line and web-based MHC binding predictors☆89Updated last month
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆76Updated 2 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆110Updated this week
- Public repository for ShapeMapper 2 releases☆30Updated 9 months ago
- WebLogo 3: Sequence Logos redrawn☆147Updated 3 weeks ago
- ☆66Updated last year
- RNA-seq data analysis practical☆60Updated 10 years ago
- A list of positions (mostly biology-related) open to apply☆32Updated 3 weeks ago
- Collection of papers related to BCR repertoire analyses☆17Updated 2 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆35Updated 3 weeks ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆48Updated 3 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆16Updated 2 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆107Updated 2 months ago
- Core code for the DeepHF prediction tool☆35Updated 5 years ago
- ☆61Updated 4 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆66Updated 4 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆28Updated this week
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆90Updated 3 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆113Updated last year
- Evolutionary velocity with protein language models☆83Updated last year
- ☆38Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆90Updated 2 weeks ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆205Updated 2 months ago
- HLA-II ligand predictor.☆35Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆86Updated 5 years ago