Alternatives and similar repositories for spatPomp

Users that are interested in spatPomp are comparing it to the libraries listed below

• epiforecasts / EpiNow2
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆131Updated 2 weeks ago
• CDCgov / wastewater-informed-covid-forecasting
  Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
  ☆49Updated last week
• kingaa / pomp
  R package for statistical inference using partially observed Markov processes
  ☆119Updated last month
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• CDCgov / ww-inference-model
  An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …
  ☆25Updated 8 months ago
• andrewcparnell / jags_examples
  A large set of JAGS examples using R
  ☆98Updated 2 years ago
• ChrisHIV / teaching
  ☆19Updated last month
• TheoMichelot / hmmTMB
  Fit hidden Markov models using Template Model Builder (TMB): flexible state-dependent distributions, transition probability structures, r…
  ☆57Updated 2 weeks ago
• mrc-ide / EpiEstim
  A tool to estimate time varying instantaneous reproduction number during epidemics
  ☆99Updated 2 months ago
• privefl / bigstatsr
  R package for statistical tools with big matrices stored on disk.
  ☆181Updated last month
• PLN-team / PLNmodels
  A collection of Poisson lognormal models for multivariate count data analysis
  ☆57Updated last month
• nimble-dev / nimble
  The base NIMBLE package for R
  ☆181Updated last week
• florianhartig / BayesianTools
  General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
  ☆127Updated last year
• crsl4 / mindful-programming
  Computing resources for peace of mind
  ☆13Updated 2 years ago
• appliedepi / epiRhandbook_eng
  The repository for the English version of the Epidemiologist R Handbook
  ☆124Updated 7 months ago
• thibautjombart / OutbreakTools
  Basic Tools for the Analysis of Disease Outbreaks
  ☆12Updated 5 years ago
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆22Updated this week
• earthlab / rslurm
  Submit R code to a Slurm cluster
  ☆55Updated 2 years ago
• epinowcast / epinowcast
  Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…
  ☆62Updated 2 weeks ago
• jamesotto852 / ggdensity
  An R package for interpretable visualizations of bivariate density estimates
  ☆231Updated last year
• lindeloev / mcp
  Regression with Multiple Change Points
  ☆112Updated 11 months ago
• kaskr / adcomp
  AD computation with Template Model Builder (TMB)
  ☆187Updated last month
• openpharma / mmrm
  Mixed Models for Repeated Measures (MMRM) in R.
  ☆144Updated this week
• vnminin / SISMID_MCMC_I
  Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)
  ☆24Updated 4 years ago
• Pakillo / LM-GLM-GLMM-intro
  A unified framework for data analysis with GLM/GLMM in R
  ☆121Updated 7 months ago
• nschiett / fishualize
  The fishualize package provides color scales and silhouettes for plotting in R based on nature’s most stunning and colorful organisms: te…
  ☆158Updated last year
• exaexa / scattermore
  very fast scatterplots for R
  ☆258Updated 3 months ago
• gavinsimpson / gratia
  ggplot-based graphics and useful functions for GAMs fitted using the mgcv package
  ☆227Updated last week
• eric-pedersen / mixed-effect-gams
  Repo for tutorial/paper on mixed-effect GAMs
  ☆123Updated 5 years ago
• adeverse / ade4
  Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
  ☆43Updated 2 months ago