erscott / pandasVCFLinks
VCF parser using the Python pandas library
☆27Updated 3 years ago
Alternatives and similar repositories for pandasVCF
Users that are interested in pandasVCF are comparing it to the libraries listed below
Sorting:
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- conda recipes for genomic data☆84Updated 4 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Browser based application for viewing bam alignments☆56Updated 9 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆128Updated 5 years ago
- 3D hotspot mutation proximity analysis tool☆50Updated 2 years ago
- ☆69Updated 3 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 3 weeks ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Updated 3 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- python access to UCSC genomes database☆136Updated 5 years ago
- ☆27Updated 6 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 7 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- phenotype-based prioritization of candidate genes for human diseases☆65Updated 2 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Fast spliced aligner with low memory requirements☆41Updated 10 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago