Alternatives and similar repositories for tree-sitter-snakemake

Users that are interested in tree-sitter-snakemake are comparing it to the libraries listed below

• nextflow-io / nf-hello
  Nextflow plugin implementation skeleton
  ☆11Updated 2 weeks ago
• nextflow-io / language-server
  The Nextflow language server
  ☆23Updated last week
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• sandbox-bio / sandbox.bio
  Interactive bioinformatics tutorials
  ☆33Updated last month
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)
  ☆14Updated this week
• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 5 years ago
• Rbfinch / grepq
  quickly filter fastq files by matching sequences to a set of regex patterns
  ☆53Updated 2 months ago
• bcbio / bcbioR
  R package with well defined templates for most common pipelines
  ☆15Updated 2 months ago
• LukeGoodsell / nextflow-vim
  Nextflow plugin for VIM
  ☆50Updated 2 years ago
• RefTrace / RefTrace
  Lint Nextflow pipelines in Python.
  ☆11Updated 7 months ago
• fulcrumgenomics / prymer
  Python Primer Design Library
  ☆13Updated 5 months ago
• qbic-pipelines / rnadeseq
  Differential gene expression analysis and pathway analysis of RNAseq data
  ☆32Updated 2 months ago
• stjude-rust-labs / chainfile
  A crate for working with genomics chain files.
  ☆11Updated last month
• kloetzl / biozsh
  the z in bioinformatics
  ☆33Updated 2 years ago
• awslabs / linter-rules-for-nextflow
  Linter rules for Nextflow DSL scripts
  ☆34Updated 2 months ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆24Updated last month
• edmundmiller / nextflow-mode
  Emacs major mode for Nextflow
  ☆23Updated 8 months ago
• snakemake-workflows / ngs-test-data
  A workflow for creating small NGS test data sets, useful for continuous integration.
  ☆24Updated last year
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated this week
• independentdatalab / tf-aws-env-nf
  Terraform template to create AWS resources to execute jobs using nextflow
  ☆22Updated 2 years ago
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆27Updated last month
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• nextflow-io / hyperopt
  Nextflow pipeline for hyperparameter optimization of machine learning models
  ☆24Updated last year
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆40Updated last year
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated last year
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆20Updated 4 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago