Alternatives and similar repositories for tree-sitter-snakemake:

Users that are interested in tree-sitter-snakemake are comparing it to the libraries listed below

• sandbox-bio / sandbox.bio
  Interactive bioinformatics tutorials
  ☆25Updated 3 weeks ago
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆23Updated last month
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆21Updated 3 weeks ago
• kcleal / superintervals
  Fast interval intersection library
  ☆35Updated 3 weeks ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 9 years ago
• fulcrumgenomics / prymer
  Python Primer Design Library
  ☆12Updated last week
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated 3 weeks ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated 10 months ago
• fulcrumgenomics / nf-dotenv
  Automatically source dotenv files into your Nextflow scope
  ☆9Updated 3 weeks ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated last year
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆28Updated last month
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated 3 weeks ago
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆17Updated last year
• Rbfinch / grepq
  quickly filter fastq files by matching sequences to a set of regex patterns
  ☆40Updated this week
• mbhall88 / ssubmit
  Submit slurm sbatch jobs without a script
  ☆66Updated 5 months ago
• nextflow-io / language-server
  The Nextflow language server
  ☆17Updated this week
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆31Updated last week
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆52Updated 3 weeks ago
• PF2-pasteur-fr / checkMyIndex
  Search for a set of compatible indexes for your sequencing experiment
  ☆11Updated 5 years ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆49Updated 6 months ago
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated last year
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated last month
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 6 months ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆14Updated 4 months ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 3 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆27Updated 3 weeks ago
• nextflow-io / nf-gpt
  Experimental plugin to integrate GPT like prompt into Nextflow
  ☆15Updated 10 months ago