Alternatives and similar repositories for tree-sitter-snakemake

Users that are interested in tree-sitter-snakemake are comparing it to the libraries listed below

• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆25Updated this week
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• sandbox-bio / sandbox.bio
  Interactive bioinformatics tutorials
  ☆31Updated 3 weeks ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated last month
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆23Updated 2 weeks ago
• maragkakislab / samql
  SQL-like query language for the SAM/BAM file format
  ☆28Updated last year
• fulcrumgenomics / prymer
  Python Primer Design Library
  ☆13Updated last month
• kloetzl / biozsh
  the z in bioinformatics
  ☆33Updated last year
• nextflow-io / nf-hello
  Nextflow plugin implementation skeleton
  ☆10Updated last week
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆29Updated 4 months ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated last week
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated 2 months ago
• fulcrumgenomics / nf-dotenv
  Automatically source dotenv files into your Nextflow scope
  ☆9Updated last month
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆38Updated 5 months ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆19Updated last year
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• seqeralabs / seqerakit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆30Updated this week
• luslab / luslab-nf-modules
  Luslab nextflow modules
  ☆14Updated 4 years ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆21Updated 2 weeks ago
• seb-mueller / snakemake-bisulfite
  Pipeline for BS-Seq data based on snakemake
  ☆6Updated 3 years ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 4 months ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• genepi / imputationserver2
  Imputation Server 2 workflow to facilitate genotype imputation at scale.
  ☆24Updated 4 months ago
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated this week
• dancooke / starfish
  Intersect multiple VCF files with haplotype awareness
  ☆25Updated 4 years ago
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆57Updated 2 weeks ago