Alternatives and similar repositories for SPADEVizR

Users that are interested in SPADEVizR are comparing it to the libraries listed below

• vsbuffalo / gplyr
  ☆18Updated 8 years ago
• gmbecker / genbankr
  ☆20Updated last year
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆13Updated 2 months ago
• csoneson / treeclimbR
  ☆20Updated last month
• dib-lab / SSUsearch
  A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis
  ☆10Updated 9 years ago
• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆27Updated 6 years ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 4 years ago
• gosling-lang / grosling
  R interface to 'Gos'
  ☆39Updated 2 years ago
• gogleva / SecretSanta
  flexible pipelines for scalable secretome prediction, R package
  ☆12Updated 6 years ago
• genomematt / xenomapper
  A utility for splitting mixed origin NGS reads
  ☆10Updated 4 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆18Updated 3 years ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• EvaYiwenWang / Managing_batch_effects
  ☆13Updated 2 years ago
• statdivlab / tinyvamp
  ☆19Updated last year
• gjuggler / ggphylo
  Phylogenetic plots for R and ggplot
  ☆27Updated 12 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 5 months ago
• reptalex / phylofactor
  ☆27Updated last year
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆40Updated last year
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆15Updated 3 years ago
• nstrayer / D3ManhattanPlots
  An R HTMLWidget for making interactive manhattan plots for GWAS.
  ☆19Updated 9 years ago
• shaunpwilkinson / aphid
  Analysis with Profile Hidden Markov Models
  ☆22Updated 10 months ago
• KlausVigo / ggnetworx
  phylogenetic networks using ggplot2 and ggtree
  ☆13Updated 5 months ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• fmichonneau / phylobase
  An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data
  ☆19Updated last year
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 5 years ago
• ChrisLou-bioinfo / gg.gap
  Easy to define segments in y-axis for 'ggplot2'.
  ☆28Updated 5 years ago
• wejlab / MetaScope
  An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
  ☆19Updated last month