tristanic / isolde
Interactive molecular dynamics based model building into low-resolution crystallographic and cryo-EM maps
☆36Updated last week
Alternatives and similar repositories for isolde:
Users that are interested in isolde are comparing it to the libraries listed below
- Useful aliases and startup settings for ChimeraX☆29Updated 5 months ago
- Structure refinement and validation for crystallography and single particle analysis☆26Updated 3 weeks ago
- qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.☆39Updated 3 weeks ago
- From cryo-EM density map to atomic structure☆24Updated 2 months ago
- A Python package to generate free energy landscape (FEL) of molecular dynamics (MD) trajectory obtained from GROMACS. It also extracts th…☆10Updated 9 months ago
- ☆38Updated 2 months ago
- Modeling with limited data☆56Updated 3 months ago
- ☆52Updated last year
- Protein and nucleic acid validation service☆68Updated 11 months ago
- dictionary of monomers and links☆14Updated last month
- ☆68Updated 7 months ago
- Rigid body fitting of atomic strucures in cryo-electron microscopy density maps☆20Updated 2 months ago
- Software for the prediction of DEER and PRE data from conformational ensembles.☆12Updated 5 months ago
- Calculation of interatomic interactions in molecular structures☆83Updated 5 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆93Updated last year
- ☆33Updated last month
- MapQ is a plugin for UCSF Chimera to calculate Q-scores of an atomic model in a cryoEM map.☆13Updated last month
- Trusted force field files for gromacs☆44Updated 3 months ago
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- FreeSASA Python Module☆50Updated last year
- an ultra-fast and accurate program for deterministic protein sidechain packing☆29Updated 2 months ago
- Calculate electron density from a solution scattering profile☆31Updated 3 weeks ago
- A voxel based approach for dynamic cluster analysis of molecular dynamics trajectories.☆25Updated 7 months ago
- Force Fields☆56Updated 2 weeks ago
- ☆29Updated 4 months ago
- Source code for HOLE program.☆33Updated 6 months ago
- Force fields in various formats☆26Updated 9 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆34Updated 6 months ago
- Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)☆31Updated 6 months ago
- Deep learning for cryo-EM maps post-processing☆52Updated 2 months ago