Alternatives and similar repositories for plato:

Users that are interested in plato are comparing it to the libraries listed below

• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆78Updated last year
• bowang-lab / genomic-FM
  ☆22Updated 2 months ago
• DeepGraphLearning / scCello
  [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model
  ☆12Updated 2 weeks ago
• HakimBenkirane / CustOmics
  A deep-learning framework for multi-omics integration
  ☆25Updated last year
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆64Updated 2 months ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆127Updated 4 months ago
• microsoft / zero-shot-scfoundation
  ☆58Updated 7 months ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆82Updated last month
• Genentech / sVAE
  ☆59Updated last year
• sunericd / TISSUE
  TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …
  ☆29Updated last year
• rvinas / HYFA
  Hypergraph Factorisation
  ☆23Updated 4 months ago
• jsxlei / scCLIP
  ☆27Updated last year
• suinleelab / contrastiveVI
  ☆53Updated 11 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆42Updated last week
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆27Updated 7 months ago
• HelloWorldLTY / MuSe-GNN
  [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"
  ☆28Updated 9 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 2 months ago
• TencentAILabHealthcare / scpDeconv
  ☆10Updated last year
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆22Updated 7 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆86Updated this week
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆40Updated 7 months ago
• theislab / prophet
  ☆29Updated last week
• AI4SCR / MatchCLOT
  Python package implementing our method MatchCLOT for multimodal single-cell data integration
  ☆13Updated last year
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆56Updated 3 weeks ago
• nitzanlab / biolord
  ☆76Updated 7 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆111Updated last month
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆52Updated 7 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆22Updated last week
• TencentAILabHealthcare / MLA-GNN
  ☆42Updated 3 months ago
• DabinJeong / GOAT_multi-omics_biomarker
  Multi-omics biomarker discovery tool exploiting a gene-gene interaction network
  ☆16Updated 11 months ago