Alternatives and similar repositories for plato

Users that are interested in plato are comparing it to the libraries listed below

• jsxlei / scCLIP
  ☆29Updated last year
• InfectionMedicineProteomics / BINN
  Generating biologically informed neural networks
  ☆48Updated 4 months ago
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆54Updated 9 months ago
• microsoft / zero-shot-scfoundation
  ☆64Updated 9 months ago
• HelloWorldLTY / MuSe-GNN
  [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"
  ☆30Updated 11 months ago
• mims-harvard / PDGrapher
  Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
  ☆25Updated 3 weeks ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆137Updated 7 months ago
• googlebaba / StableCox
  Nature machine intelligence-Stable Cox Regression for Survival Analysis under Distribution Shifts
  ☆17Updated last month
• jimmylihui / GenBench
  ☆21Updated 3 months ago
• bowang-lab / genomic-FM
  ☆25Updated last month
• KatarinaYuan / awesome-single-cell-foundation
  Paper collection for single cell foundation models
  ☆32Updated last year
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆70Updated 4 months ago
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆22Updated 9 months ago
• TencentAILabHealthcare / scpDeconv
  ☆10Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆85Updated last year
• DeepGraphLearning / scCello
  [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model
  ☆15Updated 2 months ago
• HakimBenkirane / CustOmics
  A deep-learning framework for multi-omics integration
  ☆26Updated last year
• instadeepai / multiomics-open-research
  BulkRNABert: Cancer prognosis from bulk RNA-seq based language models
  ☆24Updated 10 months ago
• uhlerlab / discrepancy_vae
  code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions
  ☆15Updated last year
• ArnovanHilten / GenNet
  Framework for Interpretable Neural Networks
  ☆104Updated 2 months ago
• Genentech / sVAE
  ☆63Updated last year
• TencentAILabHealthcare / MLA-GNN
  ☆42Updated 5 months ago
• causalbench / causalbench-starter
  Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.
  ☆30Updated 2 years ago
• aristoteleo / tabula
  federated learning with tabular learning
  ☆20Updated 3 months ago
• AI4SCR / MatchCLOT
  Python package implementing our method MatchCLOT for multimodal single-cell data integration
  ☆13Updated 2 years ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆152Updated 2 years ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆25Updated 2 months ago
• Genentech / regLM
  Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
  ☆39Updated 8 months ago
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆35Updated last year
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 2 years ago