txWang / MOGONET
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
☆150Updated 3 years ago
Alternatives and similar repositories for MOGONET:
Users that are interested in MOGONET are comparing it to the libraries listed below
- ☆42Updated last month
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆140Updated 6 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆58Updated last year
- Deep-Learning framework for multi-omic and survival data integration☆79Updated last year
- Multi-omics integration method using AE and GCN☆33Updated last year
- MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations☆71Updated 3 months ago
- Multi-task deep learning framework for multi-omics data analysis☆40Updated 2 years ago
- ☆101Updated 10 months ago
- Identify spatial domain☆63Updated last year
- ☆11Updated 3 years ago
- ☆42Updated 10 months ago
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is multi-omics data integrative analysis framework for classification tasks in biomedi…☆13Updated 11 months ago
- Her2 Breast Cancer Project☆62Updated 2 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆78Updated 3 weeks ago
- a unified single-cell data integration framework by optimal transport☆33Updated 3 months ago
- ☆10Updated 10 months ago
- ☆37Updated last year
- Code for evaluating single cell foundation models scBERT and scGPT☆34Updated 5 months ago
- An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.☆147Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆42Updated last year
- MOMA: A Multi-task Attention Learning Algorithm for Multi-omics Data Interpretation and Classification☆16Updated last year
- ☆47Updated last month
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆113Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆53Updated last year
- a deep learning approach for integrative cancer subtyping of multi-omics data☆38Updated 8 months ago
- ☆11Updated 9 months ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆69Updated 3 months ago
- End-to-end deep learning model for low dimensional latent space extraction and multi-class classification on multi-omics datasets.☆31Updated 3 years ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆134Updated 10 months ago
- ☆64Updated last year